View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6529_low_3 (Length: 468)
Name: NF6529_low_3
Description: NF6529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6529_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 23 - 458
Target Start/End: Complemental strand, 3274387 - 3273952
Alignment:
| Q |
23 |
cggaaaaggaaccatttttgcgcattttcgcgggagatccattgacccttttgcaagattcttcttcctcttctctcttatcagtgaaagtgattgtaga |
122 |
Q |
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| T |
3274387 |
cggaaaaggaaccatttttgcgcattttcgcgggagatccattgacccttttgcaagattcttcttcctcttctctcttatcagtgaaagtgattgtaga |
3274288 |
T |
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| Q |
123 |
aacactttcactcaagctacaaacctcagaaacttcagagatctcatcaactttatagaacggtttttcaaccttattctctctatcaaatttctcaaaa |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3274287 |
aacactttcactcaagctacaaacctcagaaacttcagagatctcatcaactttatagaacggtttttcaaccttattctctctatcaaatttctcaaaa |
3274188 |
T |
|
| Q |
223 |
cactttggtttttcaacttcatatctgaacctttcatttggtttcttccacttgggtgtttctgacaacacttccttaactgtttcttcttcaacaggaa |
322 |
Q |
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| T |
3274187 |
cactttggtttttcaacttcatatctgaacctttcatttggtttcttccacttgggtgtttctgacaacacttccttaactgtttcttcttcaacaggaa |
3274088 |
T |
|
| Q |
323 |
cacaaggtggtgctctgttttcagaacctttcacttgtgaaatgctagatcttgatggttgaaaatcattgtgtgatgaagatctgttactactagcaca |
422 |
Q |
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| T |
3274087 |
cacaaggtggtgctctgttttcagaacctttcacttgtgaaatgctagatcttgatggttgaaaatcattgtgtgatgaagatctgttactactagcaca |
3273988 |
T |
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| Q |
423 |
acaacccattttgtgttggtaaaactatatcctatg |
458 |
Q |
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| T |
3273987 |
acaacccattttgtgttggtaaaactatatcctatg |
3273952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 256 - 388
Target Start/End: Complemental strand, 21070193 - 21070061
Alignment:
| Q |
256 |
tcatttggtttcttccacttgggtgtttctgacaacacttccttaactgtttcttcttcaacaggaacacaaggtggtgctctgttttcagaacctttca |
355 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| ||||||||| |
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| T |
21070193 |
tcatttggtttcttccatttgggtgtttttgacaacacttccttcgttgtttcttcttcaacaagaacataaggtggtgctctgttttcgaaacctttca |
21070094 |
T |
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| Q |
356 |
cttgtgaaatgctagatcttgatggttgaaaat |
388 |
Q |
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| T |
21070093 |
cttgtgaaatgctagatcttgatggctgaaaat |
21070061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 395 - 446
Target Start/End: Complemental strand, 21070041 - 21069990
Alignment:
| Q |
395 |
gtgatgaagatctgttactactagcacaacaacccattttgtgttggtaaaa |
446 |
Q |
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||||||||||| |||||||||||||||||||| || ||||||||||| |||| |
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| T |
21070041 |
gtgatgaagatttgttactactagcacaacaatcccttttgtgttggcaaaa |
21069990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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