View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6529_low_8 (Length: 331)
Name: NF6529_low_8
Description: NF6529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6529_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 47933773 - 47934093
Alignment:
| Q |
1 |
tgttacctttgtttatgggttcttgtcagtgagcccgccattggattcttctattttgccttctaattaaccatttgttgcccttctagaacatcggttg |
100 |
Q |
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| T |
47933773 |
tgttacctttgtttatggtttcttgtcagtgagcccgccattggattcttctcttttgccttctaattaaccatttgttgcccttctagaacatcggttg |
47933872 |
T |
|
| Q |
101 |
agggtttcgtcattgttagtgctactacctcgccattacccctgacagttattttcgaatataccagttttgatgcaatggtaaagttgctgtcacgtaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
47933873 |
agggtttcgtcattgttagtgctactacctcgccaatacccctgacagttattttcgaatataccagctttgatgcaatggtaaagttgttgtcacgtaa |
47933972 |
T |
|
| Q |
201 |
ctaaaagggtatttaggtcttgagaacaccctctggtgtaaacaacacggaagcagcgcacaatataccaattgattggacccccttcctagaacggctc |
300 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47933973 |
ctaaaaaggtatttaagtcttgagaacaccctctggtgtaaacatcacggaagcagcgcacaatataccaattgattggacccccttcctagaacggctc |
47934072 |
T |
|
| Q |
301 |
atttactagaacggctctctg |
321 |
Q |
| |
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||||||||||| ||||||||| |
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| T |
47934073 |
atttactagaatggctctctg |
47934093 |
T |
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