View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6529_low_9 (Length: 320)

Name: NF6529_low_9
Description: NF6529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6529_low_9
NF6529_low_9
[»] chr3 (2 HSPs)
chr3 (23-308)||(49676562-49676847)
chr3 (69-224)||(49661136-49661285)
[»] chr8 (1 HSPs)
chr8 (21-280)||(15116364-15116624)


Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 23 - 308
Target Start/End: Complemental strand, 49676847 - 49676562
Alignment:
Q  23 ggaccagctaacatatgactttgaatttcatcgaaatcttcaacatattctgcatcactgtgaagggaatcatcatcttcaaagcaaggacctgctaacg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  49676847 ggaccagctaacatatgactttgaatttcatcgaaatcttcaacatactctgcatcactgtgaagggaatcatcatcttcaaagcaaggatctgctaacg 49676748  T
Q  123 tattattacaaaaattatttgcactgccacctataacactacagctaccaacagaactcggattactataagaataacctggttcttcaatggtttcagg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49676747 tattattacaaaaattatttgcactgccacctataacactacagctaccaacagaactcggattactataagaataacctggttcttcaatggtttcagg 49676648  T
Q  223 aacatgcgttgtaacatcactaaatttctccttcctccattcgtacaattgatctgtacaattagtgacagaataatgcatatatt 308  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  49676647 aacatgcgttgtaacatcactaaatttctccttcctcgattcatacaattgatctgtacaattagtgacagaataatgcatatatt 49676562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 224
Target Start/End: Complemental strand, 49661285 - 49661136
Alignment:
Q  69 attctgcatcactgtgaagggaatcatcatcttcaaagcaaggacctgctaacgtattattacaaaaattatttgcactgccacctataacactacagct 168  Q
    |||||||||||||| |||||||| | |||||||    ||||||||||||||| |||| |  | |||| | |||||| || |||| ||| |||||||||||    
T  49661285 attctgcatcactgcgaagggaaacgtcatcttg---gcaaggacctgctaatgtatcaccaaaaaattcatttgcgctaccacttattacactacagct 49661189  T
Q  169 accaacagaactcggattactataagaataacctggttcttcaatggtttcaggaa 224  Q
     ||||| ||||||  ||||||   |||| || ||||||||| ||||||||||||||    
T  49661188 gccaactgaactcatattact---agaaaaatctggttcttgaatggtttcaggaa 49661136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 21 - 280
Target Start/End: Original strand, 15116364 - 15116624
Alignment:
Q  21 aaggaccagctaacatatgactttgaatttcatcgaaatcttcaacatattctgcatcact-gtgaagggaatcatcatcttcaaagcaaggacctgcta 119  Q
    |||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| || | |||||||||| || ||||||||| ||||| ||||||    
T  15116364 aaggaccagcaaacatatcactttgaatttcatccaaatcttcaacatattctgcatcgctagcgaagggaatcgtcgtcttcaaagtaaggatctgcta 15116463  T
Q  120 acgtattattacaaaaattatttgcactgccacctataacactacagctaccaacagaactcggattactataagaataacctggttcttcaatggtttc 219  Q
    || |||| ||| || |||||||||||||| ||| ||||||||||||||| ||||  |||||| |||||||||||||||||||||||||||||||||||||    
T  15116464 acatatttttaaaagaattatttgcactgtcacgtataacactacagctgccaaatgaactcagattactataagaataacctggttcttcaatggtttc 15116563  T
Q  220 aggaacatgcgttgtaacatcactaaatttctccttcctccattcgtacaattgatctgta 280  Q
    |||||| ||||||||||||||||||| ||||||||||||| |||| |||||||||| ||||    
T  15116564 aggaacgtgcgttgtaacatcactaagtttctccttcctcgattcatacaattgatttgta 15116624  T

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