View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6530_high_15 (Length: 238)

Name: NF6530_high_15
Description: NF6530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6530_high_15
NF6530_high_15
[»] chr7 (1 HSPs)
chr7 (1-222)||(38040657-38040878)
[»] chr6 (2 HSPs)
chr6 (13-222)||(31837013-31837225)
chr6 (1-222)||(31841030-31841262)


Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38040657 - 38040878
Alignment:
Q  1 ttttacgccttaaaataactttgatctctagttaaattttttcttatcaaaatttgttttctaatcaattaaacttgttgcagtcttcaagaatcaaaga 100  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  38040657 ttttacgcctttaaataactttgatcgctagttaaattttttcttatcaaaatttgttttctaatcaattaaacttgttgcagtcttcaagaatcagaaa 38040756  T
Q  101 aagattaaggaagagcaatctctgagagaatcttgtcttgtcaatggaagaactttacgttgcagaagacgaagttctccttatgaactacgaggagctc 200  Q
    || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38040757 aaaattaaggaagaggaatctctgagagaatcttgtcttgtcaatggaagaactttacgttgcagaagacgaagttctccttatgaactacgaggagctc 38040856  T
Q  201 gtgagagagggagttcatcaaa 222  Q
    ||||||||||||||||||||||    
T  38040857 gtgagagagggagttcatcaaa 38040878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 31837013 - 31837225
Alignment:
Q  13 aaataactttgatctctagttaaattttttcttatcaaaatttgttttctaatcaattaaacttgttgcagtct---tcaagaatcaaagaaagattaag 109  Q
    |||||||||||||  ||||||| ||||||| |||| ||||||||||||||||||||  |||||||||||||| |    ||||||||| ||||| ||||||    
T  31837013 aaataactttgatggctagttatatttttttttattaaaatttgttttctaatcaacgaaacttgttgcagtttatcacaagaatcagagaaaaattaag 31837112  T
Q  110 gaagagcaatctctgagagaatcttgtcttgtcaatggaagaactttacgttgcagaagacgaagttctccttatgaactacgaggagctcgtgagagag 209  Q
    |||||||||| ||||||||| |||||| ||| ||||||||| |||| |||| |||||||||||||||||||||||||| || ||  ||||||||||||||    
T  31837113 gaagagcaatttctgagagagtcttgtgttggcaatggaagcacttcacgtcgcagaagacgaagttctccttatgaattatgaaaagctcgtgagagag 31837212  T
Q  210 ggagttcatcaaa 222  Q
    |||||||||||||    
T  31837213 ggagttcatcaaa 31837225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31841030 - 31841262
Alignment:
Q  1 ttttacgccttaaaataactttgatctctagttaaattttttcttatcaaaatttgttttctaatcaattaaacttgttgcagtcttc------------ 88  Q
    ||||||||| | |||||||||||||| ||||||| |||||||||||| || |||||||||||||||||  ||||||||||||||||||                
T  31841030 ttttacgccattaaataactttgatcgctagttatattttttcttattaagatttgttttctaatcaacgaaacttgttgcagtcttctcttcaattatc 31841129  T
Q  89 --aagaatcaaagaaagattaaggaagagcaatctctgagagaatcttgtcttgtcaatggaagaactttacgttgcagaagacgaagttctccttatga 186  Q
      |||||||| | |   || ||||||||||||| ||||| ||| ||||||   ||||||||||| |||| |||| |||||||||||||||||||||||||    
T  31841130 acaagaatcagaaagcaatcaaggaagagcaatttctgatagagtcttgt---gtcaatggaagcacttcacgtcgcagaagacgaagttctccttatga 31841226  T
Q  187 actacgaggagctcgtgagagagggagttcatcaaa 222  Q
    | || ||  |||||||||||||||||||||||||||    
T  31841227 attatgaaaagctcgtgagagagggagttcatcaaa 31841262  T

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