View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6530_high_6 (Length: 353)
Name: NF6530_high_6
Description: NF6530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6530_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 36941658 - 36941946
Alignment:
| Q |
18 |
aaatatgttatcaaagaatgagactcttgcaattctcaccttaaatgttgtctcatcaaatcataaaactaatttttctt--gtcaaattctaatcacat |
115 |
Q |
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| T |
36941658 |
aaatatgttattaaagaatgacactcttgcaattcccaccttaaatgttgtctcatcaaatcataaaactaattttttttttgtcaaattctaaccacat |
36941757 |
T |
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| Q |
116 |
attaattcatttgcaaacagtacttcatccttgcagtttagttcacctgaatgtctatgaccgttgaccataaaatggataggaagttacctcattgttt |
215 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36941758 |
attaattcatttgcaaacagtacttcatccttggagttaagttcacctgaatgtctatgaccgttgaccataaaatggatagaaagttacctcattgttt |
36941857 |
T |
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| Q |
216 |
cacc-aactaacatctagaatgttgaattctgcattttgaaaatctccaatatgtatgtatctaacaacctttactcacaaatcaaaca |
303 |
Q |
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| T |
36941858 |
caccaaactaacatctagaatgttgaattctgcattttgaaaatctccaattaatatgtatctaacaacctttactcacaaatcaaaca |
36941946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 56 - 342
Target Start/End: Original strand, 36944845 - 36945121
Alignment:
| Q |
56 |
ccttaaatgttgtctcatcaaatcataaaactaatttttcttgtcaaattctaatcacatattaattcatttgcaaacagtacttcatccttgcagttta |
155 |
Q |
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| T |
36944845 |
ccttaaatgttgtctcatcaaatcataaaactaatttttcttgtcaaattccaaccacat------tcatttgcaaacagtacttcatccttgcagttaa |
36944938 |
T |
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| Q |
156 |
gttcacctgaatgtctatgaccgttgaccataaaatggataggaagttacctcattgtttcaccaactaacatctagaatgttgaattctgcattttgaa |
255 |
Q |
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| T |
36944939 |
gttcacctgaatgtctatgactgttgaccataaaatggacagaaagttacctcattgtttcaccaactaacatctagcatgttgaattctatattttgaa |
36945038 |
T |
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| Q |
256 |
aatctccaatatgtatgtatctaacaacctttactcacaaatcaaacacacacactacaagtgactcacctacctacctttcatatt |
342 |
Q |
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| T |
36945039 |
aatctccaa----tatgtatctaacaacctttactcacaaatcaaacacacacactacaagtgactcacctacctacctttcatatt |
36945121 |
T |
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