View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6530_high_7 (Length: 311)
Name: NF6530_high_7
Description: NF6530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6530_high_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 311
Target Start/End: Complemental strand, 32906692 - 32906391
Alignment:
| Q |
12 |
aattcttcaaggactagtaattgaactggtgttggactccaccttgagcttggttgaggatgcataatattgcttgttccttgctcagctgcatgagctg |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32906692 |
aattcttcaaggactagtaattgaactggtgttggactccaccttgagcttggttgaggatgcataatattgcttgttccttgctcagctgcatgagttg |
32906593 |
T |
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| Q |
112 |
tataatatatatacaaaacccatgaagaaaatagttaagctaattagggcatatataatatagctcaaaatcaaattattttagtgtatgtatggtcaaa |
211 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32906592 |
tataatatatatacaaaacacatgaagaaaatagttaagctaattagggcatatataatatagctcaaaatcaaattattttagtgtctgtatggtcaaa |
32906493 |
T |
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| Q |
212 |
tttcttagcagaaatatacaaacaagtaaataagtaaatgaccacatga--atatagttactcatattgaaaaagagaagattatactatgatgggatat |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32906492 |
tttcttagcagaaatatacaaacaagtaaataagtaaatgaccgcatgaatatatagttactcatattgaaaaagagaagattatactatgatgggatat |
32906393 |
T |
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| Q |
310 |
tc |
311 |
Q |
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|| |
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| T |
32906392 |
tc |
32906391 |
T |
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