View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6530_low_1 (Length: 594)
Name: NF6530_low_1
Description: NF6530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6530_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 17 - 587
Target Start/End: Original strand, 50909603 - 50910153
Alignment:
| Q |
17 |
atatatatggcaccttcaaactccaaaatcaagatgtgtaagaattaagattgatttataaatcaattttgggggcgcacgagatgtaaggggtggaaga |
116 |
Q |
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| T |
50909603 |
atatatatggcaccttcaaactccaaaatcaagatgtgtaagaattaagattgatttataaatcaatttgggggacgcacgagatgtaaggggtggaaga |
50909702 |
T |
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| Q |
117 |
aaaatttcatgtcgttgtgtcatagatttatttaacttgaaaataggctaaacacatccacgattaaacccaacccaattcaaaagagacataaacaaaa |
216 |
Q |
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| T |
50909703 |
aaaatttcatgtcgttgtgtcatagattta----acttgaaaataggctaaa----------------cccaacccaattcaaaagagacataaacaaaa |
50909782 |
T |
|
| Q |
217 |
gtacacctacgctacgcaaggtcttgctaaagtgtgagtaaatttgaaaatatggctactctaatacaatttagcaataatgcatggtaataattcaaaa |
316 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50909783 |
gtacacctacgctacgcaagctcttgctaaagtgtgagtaaatttgaaaatatggctactctaatacaatttagcaataatgcatggtaataattcaaaa |
50909882 |
T |
|
| Q |
317 |
agaggatcaagtaatacgatgacttcatctatctatgtagtattgttggaacaagagttagaaaaacatagtgttccaacaagtattaatctattagacg |
416 |
Q |
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| T |
50909883 |
agaggatcaagtaatacgatgacttcatctatctatgtagtattgttggaacaagagttagaaaaacatagtgttccaacaagtattaatctattagacg |
50909982 |
T |
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| Q |
417 |
cgtctttactgctttgggatggctaatacttaattgttgctggaacaggagccagttcttccaggttcctttcccttacgaagttcagggcgagaaagat |
516 |
Q |
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| T |
50909983 |
cgtctttactgctttgggatggctaatacttaattgttgctggaacaggagccagttcttccaggttcctttcccttacgaagttcagggcgagaaagat |
50910082 |
T |
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| Q |
517 |
gacaagatattcgctgtctgtgcatgaaattcagggcaagaaagacgacaagatattcgctgtctgtgctg |
587 |
Q |
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| T |
50910083 |
gacaagatattcgctgtctgtgcatgaaattcagggcaagaaagacgacaagatattcgctgtctgtgctg |
50910153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 391 - 489
Target Start/End: Original strand, 50901041 - 50901143
Alignment:
| Q |
391 |
tccaacaagtattaatctattagacgcgtctt---tactgctttgggatggctaatacttaattgttgctggaaca-ggagccagttcttccaggttcct |
486 |
Q |
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|||| ||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| || |
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| T |
50901041 |
tccaccaagtattaatctattagatgtgtcttctttactgctttgggatggctaatacttaattgttggtggaacagggagccggttcttccaggttgct |
50901140 |
T |
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| Q |
487 |
ttc |
489 |
Q |
| |
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||| |
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| T |
50901141 |
ttc |
50901143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 249 - 351
Target Start/End: Original strand, 43548535 - 43548637
Alignment:
| Q |
249 |
tgtgagtaaatttgaaaatatggctactctaatacaatttagcaataatgcatggtaataattcaaaaagaggatcaagtaatacgatgacttcatctat |
348 |
Q |
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||||||||||||| ||||||| || |||||||||||| | ||||||||||||| || |||||| |||||||||||||||| | | |||||||||||| |
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| T |
43548535 |
tgtgagtaaatttcaaaatattactcctctaatacaatctgacaataatgcatggaaacaattcataaagaggatcaagtaagaagtcgacttcatctat |
43548634 |
T |
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| Q |
349 |
cta |
351 |
Q |
| |
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||| |
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| T |
43548635 |
cta |
43548637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 249 - 331
Target Start/End: Original strand, 29368771 - 29368852
Alignment:
| Q |
249 |
tgtgagtaaatttgaaaatatggctactctaatacaatttagcaataatgcatggtaataattcaaaaagaggatcaagtaat |
331 |
Q |
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| T |
29368771 |
tgtgagtaaattttaaaa-atggctactgtaatacaatttcacaataatacatggtaacacttcaaaaagaggatgaagtaat |
29368852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 499 - 539
Target Start/End: Original strand, 43548853 - 43548893
Alignment:
| Q |
499 |
gttcagggcgagaaagatgacaagatattcgctgtctgtgc |
539 |
Q |
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| T |
43548853 |
gttcagggcgagaaagatgacaagataattgctgtctgtgc |
43548893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 539
Target Start/End: Original strand, 50901265 - 50901303
Alignment:
| Q |
501 |
tcagggcgagaaagatgacaagatattcgctgtctgtgc |
539 |
Q |
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| T |
50901265 |
tcagggcgagaaagatgacaagataattgctgtctgtgc |
50901303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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