View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6530_low_12 (Length: 251)

Name: NF6530_low_12
Description: NF6530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6530_low_12
NF6530_low_12
[»] chr6 (8 HSPs)
chr6 (179-251)||(18764751-18764823)
chr6 (22-89)||(20024441-20024508)
chr6 (179-246)||(20024192-20024259)
chr6 (187-243)||(14601909-14601965)
chr6 (99-143)||(18764950-18764994)
chr6 (19-69)||(21391912-21391962)
chr6 (210-245)||(21391671-21391706)
chr6 (18-47)||(18765008-18765037)
[»] chr5 (1 HSPs)
chr5 (19-69)||(32725386-32725436)
[»] chr3 (1 HSPs)
chr3 (186-238)||(9765250-9765302)


Alignment Details
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 18764823 - 18764751
Alignment:
Q  179 gcaccaccgcatcgaatagaaagatacaactccatctatcttttgtctgcatgaacaaattgaaagttaaaat 251  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18764823 gcaccgccgcatcgaatagaaagatacaactccatctatcttttgtctgtatgaacaaattgaaagttaaaat 18764751  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 20024508 - 20024441
Alignment:
Q  22 ggtgacatccatttgctacctttggttgagaatgttttaaaataaatagaataaaatgcttattcaag 89  Q
    ||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| |||||||||    
T  20024508 ggtgacatccatttgctgcgtttggttgagaatgtttaaaaataaatagaataaaatgattattcaag 20024441  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 20024259 - 20024192
Alignment:
Q  179 gcaccaccgcatcgaatagaaagatacaactccatctatcttttgtctgcatgaacaaattgaaagtt 246  Q
    ||||| ||| |||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||    
T  20024259 gcaccgccgtatcgaatagaaagatacaactccatctatcatttgtttgcatgaagaaattgaaagtt 20024192  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 14601965 - 14601909
Alignment:
Q  187 gcatcgaatagaaagatacaactccatctatcttttgtctgcatgaacaaattgaaa 243  Q
    ||||||||| |||||| |||||| |||||||| ||||||| ||||||||||||||||    
T  14601965 gcatcgaatcgaaagacacaactacatctatcatttgtctccatgaacaaattgaaa 14601909  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 18764994 - 18764950
Alignment:
Q  99 tacatacaatctgcaaggcatttgttattgctaaatggtataaat 143  Q
    |||||||||||||||||||||||||||||||||| | ||||||||    
T  18764994 tacatacaatctgcaaggcatttgttattgctaactcgtataaat 18764950  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 21391962 - 21391912
Alignment:
Q  19 cctggtgacatccatttgctacctttggttgagaatgttttaaaataaata 69  Q
    ||||||||||| |||||||| |||||||||||||||||||| | |||||||    
T  21391962 cctggtgacatacatttgctgcctttggttgagaatgttttgacataaata 21391912  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 210 - 245
Target Start/End: Complemental strand, 21391706 - 21391671
Alignment:
Q  210 ccatctatcttttgtctgcatgaacaaattgaaagt 245  Q
    ||||||||| ||||||||||||||||||||||||||    
T  21391706 ccatctatcatttgtctgcatgaacaaattgaaagt 21391671  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 18765037 - 18765008
Alignment:
Q  18 tcctggtgacatccatttgctacctttggt 47  Q
    ||||||||||||||||||||||||||||||    
T  18765037 tcctggtgacatccatttgctacctttggt 18765008  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 32725436 - 32725386
Alignment:
Q  19 cctggtgacatccatttgctacctttggttgagaatgttttaaaataaata 69  Q
    |||||||||||||||||| |  ||||||||||||||||||| | |||||||    
T  32725436 cctggtgacatccatttgttgtctttggttgagaatgttttgacataaata 32725386  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 9765302 - 9765250
Alignment:
Q  186 cgcatcgaatagaaagatacaactccatctatcttttgtctgcatgaacaaat 238  Q
    ||||||||||||||||| |  ||||||| |||| |||||||||||||| ||||    
T  9765302 cgcatcgaatagaaagacaatactccatatatcatttgtctgcatgaagaaat 9765250  T

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