View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6530_low_15 (Length: 238)

Name: NF6530_low_15
Description: NF6530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6530_low_15
NF6530_low_15
[»] chr7 (8 HSPs)
chr7 (20-226)||(20456378-20456584)
chr7 (24-214)||(20414759-20414949)
chr7 (87-212)||(35205929-35206051)
chr7 (135-212)||(21210486-21210563)
chr7 (142-212)||(13888099-13888169)
chr7 (20-212)||(21218713-21218902)
chr7 (21-194)||(7311233-7311400)
chr7 (91-194)||(7328125-7328225)
[»] scaffold0064 (1 HSPs)
scaffold0064 (148-212)||(24206-24270)
[»] chr5 (1 HSPs)
chr5 (141-204)||(28763918-28763981)
[»] chr1 (1 HSPs)
chr1 (142-189)||(31442999-31443046)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 20456378 - 20456584
Alignment:
Q  20 ctaggtactgagacatacacaaagttgatgccccctccaagttgtgagaaggtgtcatgtgcatatgcaagtgtttgtgtgttgatgaactccttttgtt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20456378 ctaggtactgagacatacacaaagttgatgccccctccaagttgtgagaaggtgtcatgtgcatatgcaagtgtttgtgtgttgatgaactccttttgtt 20456477  T
Q  120 tttatcataacacgatcaacggaaccaattttgttatatggaagatgacaaaatttggggatgacaagtcttggattccattccttaaatttaaccacca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20456478 tttatcataacacgatcaacggaaccaattttgttatatggaagatgacaaaatttggggatgacaagtcttggattccattccttaaatttaaccacca 20456577  T
Q  220 tattctt 226  Q
    || ||||    
T  20456578 taatctt 20456584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 24 - 214
Target Start/End: Original strand, 20414759 - 20414949
Alignment:
Q  24 gtactgagacatacacaaagttgatgccccctccaagttgtgagaaggtgtcatgtgcatatgcaagtgtttgtgtgttgatgaactccttttgttttta 123  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||  || || ||||| ||| ||||||||||||||| ||||||||||||||||||||    
T  20414759 gtactgagacatacacacagttgatgccccctcaaagttgtgagaatatgccaggtgcagatggaagtgtttgtgtgttcatgaactccttttgttttta 20414858  T
Q  124 tcataacacgatcaacggaaccaattttgttatatggaagatgacaaaatttggggatgacaagtcttggattccattccttaaatttaac 214  Q
    |||||| | ||||||||||||| ||||| |||||||||||||||  |||||||| |||||||||||||||| || ||||||||||||||||    
T  20414859 tcataatatgatcaacggaaccgattttattatatggaagatgatgaaatttggagatgacaagtcttggactcaattccttaaatttaac 20414949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 87 - 212
Target Start/End: Complemental strand, 35206051 - 35205929
Alignment:
Q  87 caagtgtttgtgtgttgatgaactccttttgtttttatcataacacgatcaacggaaccaattttgttatatggaagatgacaaaatttggggatgacaa 186  Q
    ||||| |||||||| ||| |||||||||||||||||||||| |     |||| |||||  ||||||||||||||||||||||| |||||||  |||||||    
T  35206051 caagtatttgtgtgctgaggaactccttttgtttttatcatgatt---tcaatggaactgattttgttatatggaagatgacagaatttggaaatgacaa 35205955  T
Q  187 gtcttggattccattccttaaattta 212  Q
    |||||||| || ||||||||||||||    
T  35205954 gtcttggactcaattccttaaattta 35205929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 21210563 - 21210486
Alignment:
Q  135 tcaacggaaccaattttgttatatggaagatgacaaaatttggggatgacaagtcttggattccattccttaaattta 212  Q
    ||||||||||  ||||||||||||||||||||||||| ||||| |||||||||||||||| || ||||||||||||||    
T  21210563 tcaacggaactgattttgttatatggaagatgacaaagtttggagatgacaagtcttggactctattccttaaattta 21210486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 13888169 - 13888099
Alignment:
Q  142 aaccaattttgttatatggaagatgacaaaatttggggatgacaagtcttggattccattccttaaattta 212  Q
    ||||||||||||||||||||| |||||||||||||| || || |||||||||| || ||||||||||||||    
T  13888169 aaccaattttgttatatggaaaatgacaaaatttggagacgaaaagtcttggactcaattccttaaattta 13888099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 21218902 - 21218713
Alignment:
Q  20 ctaggtactgagacatacacaaagttgatgccccctccaagttgtgagaaggtgtcatgtgcatatgcaagtgtttgtgtgttgatgaactccttttgtt 119  Q
    |||||||| |||||||||||| || || | ||||||||| |||||||| | |||  |  ||||    || ||||||||||||||||||||||||||||||    
T  21218902 ctaggtacagagacatacacacagatgctcccccctccaggttgtgaggatgtggtacttgcagcatcaggtgtttgtgtgttgatgaactccttttgtt 21218803  T
Q  120 tttatcataacacga--tcaacggaaccaattttgttatatggaagatgacaaaatttggggatgacaagtcttggattccattccttaaattta 212  Q
    |||||     |||||  |||| |||||  |||| ||||||||| | |||||  ||||||| ||||| |||||||||| || |||||| |||||||    
T  21218802 tttat-----cacgatttcaatggaactgatttggttatatggcaaatgacggaatttggagatgataagtcttggactcaattcctcaaattta 21218713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 7311400 - 7311233
Alignment:
Q  21 taggtactgagacatacacaaagttgatgccccctccaagttgtgagaaggtgtcatgtgcatatgcaagtgtttgtgtgttgatgaactccttttgttt 120  Q
    |||| ||||||||||||||||||||||||| ||||||||||  ||| |||  | ||  |  ||   |||||||||||||||||||||||||||| || ||    
T  7311400 tagggactgagacatacacaaagttgatgctccctccaagtgctgacaagtcgacacatttat---caagtgtttgtgtgttgatgaactccttctgctt 7311304  T
Q  121 ttatcataacacgatcaacggaaccaattttgttatatggaagatgacaaaatttggggatgacaagtcttgga 194  Q
    || |||  |     ||||||||||  ||||||||||||||||||||||| ||||||| || |||  ||||||||    
T  7311303 ttctcaaga---tttcaacggaacagattttgttatatggaagatgacagaatttggagacgaccggtcttgga 7311233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 194
Target Start/End: Original strand, 7328125 - 7328225
Alignment:
Q  91 tgtttgtgtgttgatgaactccttttgtttttatcataacacgatcaacggaaccaattttgttatatggaagatgacaaaatttggggatgacaagtct 190  Q
    |||||||||||||||||||||||| || |||| |||| |     |||||  |||  ||||||||||||||||||||||| ||||||| ||||||| ||||    
T  7328125 tgtttgtgtgttgatgaactccttatgcttttctcatgatt---tcaacaaaacagattttgttatatggaagatgacagaatttggagatgacaggtct 7328221  T
Q  191 tgga 194  Q
    ||||    
T  7328222 tgga 7328225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 24206 - 24270
Alignment:
Q  148 ttttgttatatggaagatgacaaaatttggggatgacaagtcttggattccattccttaaattta 212  Q
    |||||||||||||||||||||| ||| ||| ||||| |||||||| | || ||||||||||||||    
T  24206 ttttgttatatggaagatgacagaatatggagatgaaaagtcttgaactcaattccttaaattta 24270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 28763981 - 28763918
Alignment:
Q  141 gaaccaattttgttatatggaagatgacaaaatttggggatgacaagtcttggattccattcct 204  Q
    ||||| ||||||||||||||||||||||  ||||||| | ||| |||||||||| || ||||||    
T  28763981 gaacccattttgttatatggaagatgacgcaatttggagttgaaaagtcttggagtcgattcct 28763918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 31443046 - 31442999
Alignment:
Q  142 aaccaattttgttatatggaagatgacaaaatttggggatgacaagtc 189  Q
    |||| |||| |||||||||||||||||||||||||| ||||| |||||    
T  31443046 aaccgatttcgttatatggaagatgacaaaatttggagatgaaaagtc 31442999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University