View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6530_low_16 (Length: 238)

Name: NF6530_low_16
Description: NF6530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6530_low_16
NF6530_low_16
[»] chr7 (1 HSPs)
chr7 (1-222)||(38040657-38040878)
[»] chr6 (2 HSPs)
chr6 (13-222)||(31837013-31837225)
chr6 (1-222)||(31841030-31841262)


Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38040657 - 38040878
Alignment:
Q  1 ttttacgccttaaaataactttgatctctagttaaattttttcttatcaaaatttgttttctaatcaattaaacttgttgcagtcttcaagaatcaaaga 100  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  38040657 ttttacgcctttaaataactttgatcgctagttaaattttttcttatcaaaatttgttttctaatcaattaaacttgttgcagtcttcaagaatcagaaa 38040756  T
Q  101 aagattaaggaagagcaatctctgagagaatcttgtcttgtcaatggaagaactttacgttgcagaagacgaagttctccttatgaactacgaggagctc 200  Q
    || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38040757 aaaattaaggaagaggaatctctgagagaatcttgtcttgtcaatggaagaactttacgttgcagaagacgaagttctccttatgaactacgaggagctc 38040856  T
Q  201 gtgagagagggagttcatcaaa 222  Q
    ||||||||||||||||||||||    
T  38040857 gtgagagagggagttcatcaaa 38040878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 31837013 - 31837225
Alignment:
Q  13 aaataactttgatctctagttaaattttttcttatcaaaatttgttttctaatcaattaaacttgttgcagtct---tcaagaatcaaagaaagattaag 109  Q
    |||||||||||||  ||||||| ||||||| |||| ||||||||||||||||||||  |||||||||||||| |    ||||||||| ||||| ||||||    
T  31837013 aaataactttgatggctagttatatttttttttattaaaatttgttttctaatcaacgaaacttgttgcagtttatcacaagaatcagagaaaaattaag 31837112  T
Q  110 gaagagcaatctctgagagaatcttgtcttgtcaatggaagaactttacgttgcagaagacgaagttctccttatgaactacgaggagctcgtgagagag 209  Q
    |||||||||| ||||||||| |||||| ||| ||||||||| |||| |||| |||||||||||||||||||||||||| || ||  ||||||||||||||    
T  31837113 gaagagcaatttctgagagagtcttgtgttggcaatggaagcacttcacgtcgcagaagacgaagttctccttatgaattatgaaaagctcgtgagagag 31837212  T
Q  210 ggagttcatcaaa 222  Q
    |||||||||||||    
T  31837213 ggagttcatcaaa 31837225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31841030 - 31841262
Alignment:
Q  1 ttttacgccttaaaataactttgatctctagttaaattttttcttatcaaaatttgttttctaatcaattaaacttgttgcagtcttc------------ 88  Q
    ||||||||| | |||||||||||||| ||||||| |||||||||||| || |||||||||||||||||  ||||||||||||||||||                
T  31841030 ttttacgccattaaataactttgatcgctagttatattttttcttattaagatttgttttctaatcaacgaaacttgttgcagtcttctcttcaattatc 31841129  T
Q  89 --aagaatcaaagaaagattaaggaagagcaatctctgagagaatcttgtcttgtcaatggaagaactttacgttgcagaagacgaagttctccttatga 186  Q
      |||||||| | |   || ||||||||||||| ||||| ||| ||||||   ||||||||||| |||| |||| |||||||||||||||||||||||||    
T  31841130 acaagaatcagaaagcaatcaaggaagagcaatttctgatagagtcttgt---gtcaatggaagcacttcacgtcgcagaagacgaagttctccttatga 31841226  T
Q  187 actacgaggagctcgtgagagagggagttcatcaaa 222  Q
    | || ||  |||||||||||||||||||||||||||    
T  31841227 attatgaaaagctcgtgagagagggagttcatcaaa 31841262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University