View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6530_low_17 (Length: 216)
Name: NF6530_low_17
Description: NF6530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6530_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 8856700 - 8856513
Alignment:
| Q |
7 |
gtggaggagcagagaccaaaaccacaagtgaaatttatcaattcccattattcatcactaaacattactagtagtgatagtgattttcttgctacctaag |
106 |
Q |
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| T |
8856700 |
gtggaggattagagaccaaaaccacaagtgaaatttatcaattcccattattcatcactaaacattactagtagtgatagtgattttcttgctacctaag |
8856601 |
T |
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| Q |
107 |
caataaataaaggtgccacaaacagataaggcatactacgggcatgcagagcatgattatataagatatacatacctagtgagtgcaacgt |
197 |
Q |
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| T |
8856600 |
caataaataaaggtgccacaaacagataaggca---tacgggcatgcagagcatgattatataagatatacatacttagtgagtgcaacgt |
8856513 |
T |
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