View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6530_low_2 (Length: 582)
Name: NF6530_low_2
Description: NF6530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6530_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 507; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 10 - 564
Target Start/End: Original strand, 8946141 - 8946695
Alignment:
| Q |
10 |
ttattcttgatgtacgatttggtgatttctccatctattggactgataaagatgtttgcataacttaagtcttgaaaactatactcttcttttctaaaga |
109 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8946141 |
ttattcttgatgtatgatttggtgatttctccatctattggactaataaagatgtttgcataacttaagtcttgaaaactatactcttcttttctaaaga |
8946240 |
T |
|
| Q |
110 |
agtcgaaatttgatatatttgatatgaaaacagctccaacaacgtttgctcgatacacattagtatattgttcaataatatctccatcgtcacaaaccac |
209 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8946241 |
aatcaaaatttgatatatttgatatgaaaacagctccaacaacgtttgcttgatacacataagaatattgttcaataatatctccatcgtcacaaaccac |
8946340 |
T |
|
| Q |
210 |
aatattgttcttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaatttcctagataattagac |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8946341 |
aatattgttcttcactttgattaattctgtaacattgtcgcacaaacccatgaaaacaattggcaaattgctagcagagaaatttcctagataattagac |
8946440 |
T |
|
| Q |
310 |
caacctgtgagtgagactccattaccaagtgtaagattcgcatgaaactcacgatccacagtaccagcagcaacagttgtcaaccaaggtgttccattgc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8946441 |
caacctgtgagtgagactccattaccaagtgtaagagtcgcatgaaattcacgatccatagtaccagcagcaacagttgtcaaccatggtgttccattgc |
8946540 |
T |
|
| Q |
410 |
gaagagttttaaaatcggggccgtcattacctgctgaacaagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcatt |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8946541 |
gaagagttttaaaatcggggccgtcattacctgctgaacaagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcatt |
8946640 |
T |
|
| Q |
510 |
caaaggtaaatcaaaagttggacctaatgaaatcgaaagaacatcaacaccgtcc |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8946641 |
caaaggtaaatcaaaagttggacctaatgaaatcgaaagaacatcaacaccgtcc |
8946695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 199 - 513
Target Start/End: Complemental strand, 8962760 - 8962446
Alignment:
| Q |
199 |
tcacaaaccacaatattgttcttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaatttccta |
298 |
Q |
| |
|
|||||||||||||| | | |||||||| |||||| |||||||| |||||| |||| || |||||||||| || | ||| ||||||||||| ||||||| |
|
|
| T |
8962760 |
tcacaaaccacaatctcgctcttcactctgattagttctgtaaaattgtcacacatacctttgaaaacaatgggaatattactagcagagaagtttccta |
8962661 |
T |
|
| Q |
299 |
gataattagaccaacctgtgagtgagactccattaccaagtgtaagattcgcatgaaactcacgatccacagtaccagcagcaacagttgtcaaccaagg |
398 |
Q |
| |
|
||| ||| | || ||||||||||||||||||||||||||||||||| || ||| |||||||| | ||||| ||||||||||||| ||| ||| || |
|
|
| T |
8962660 |
tataggaagagaagccggtgagtgagactccattaccaagtgtaagattcccaaaaaattcacgatctaaagtactagcagcaacagttatcacccatgg |
8962561 |
T |
|
| Q |
399 |
tgttccattgcgaagagttttaaaatcggggccgtcattacctgctgaacaagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatc |
498 |
Q |
| |
|
| |||||||| ||||||| ||||| || || | ||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8962560 |
tattccattgtgaagagtgttaaaggaaggtccattattacctgctgaagtagacacaaaaacacctttttccatagctgcaaaagtggctattgcaatt |
8962461 |
T |
|
| Q |
499 |
ggatcttcattcaaa |
513 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
8962460 |
ggatcttcatacaaa |
8962446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 220 - 514
Target Start/End: Complemental strand, 8974135 - 8973841
Alignment:
| Q |
220 |
ttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaatttcctagataattagaccaacctgtga |
319 |
Q |
| |
|
||||||||||||| || ||||| |||||| ||| || ||||||||||||||| | ||| ||||||||||| |||||||||||| ||| | || | || |
|
|
| T |
8974135 |
ttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaagataagccagaga |
8974036 |
T |
|
| Q |
320 |
gtgagactccattaccaagtgtaagattcgcatgaaactcacgatccacagtaccagcagcaacagttgtcaaccaaggtgttccattgcgaagagtttt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||| ||||| |||||||| ||| | | ||| ||| |||||||| |||||||||| |
|
|
| T |
8974035 |
gtgagactccattaccaagtgtaagattcccacgaaactcacgatccaaagtacttgcagcaacggttattacccatggtattccattgtgaagagtttt |
8973936 |
T |
|
| Q |
420 |
aaaatcggggccgtcattacctgctgaacaagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcattcaaag |
514 |
Q |
| |
|
||| || || ||||||||||||||| |||||||| || ||| |||||||||||| ||||| ||| ||||| | |||||||||| ||||| |
|
|
| T |
8973935 |
aaaggaaggtccatcattacctgctgaagtagacacaacaacacccctttccatagctgaaaaagtggcaattgcgactggatcttcatacaaag |
8973841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 328 - 482
Target Start/End: Complemental strand, 8957617 - 8957463
Alignment:
| Q |
328 |
ccattaccaagtgtaagattcgcatgaaactcacgatccacagtaccagcagcaacagttgtcaaccaaggtgttccattgcgaagagttttaaaatcgg |
427 |
Q |
| |
|
||||| ||||||||||| || | ||||| || | ||||| ||| |||||||| |||||| | | |||||||||||||||| ||||||||| || | | |
|
|
| T |
8957617 |
ccatttccaagtgtaagggtcccttgaaattctctatccatagttccagcagccacagttatgacccaaggtgttccattgtgaagagtttcaagggcag |
8957518 |
T |
|
| Q |
428 |
ggccgtcattacctgctgaacaagacacaaaaatacctttttccatagctgcaaa |
482 |
Q |
| |
|
| || | |||||| |||||| || ||||||| ||||||||||||||||||||| |
|
|
| T |
8957517 |
gaccattattaccagctgaagtggaaacaaaaacacctttttccatagctgcaaa |
8957463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 376
Target Start/End: Original strand, 9949680 - 9949857
Alignment:
| Q |
199 |
tcacaaaccacaatattgttcttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaatttccta |
298 |
Q |
| |
|
||||||| |||||| || | ||||| ||| |||||||| |||||||||| |||| ||||||||||||||||| |||| | ||||||| |||||| ||| |
|
|
| T |
9949680 |
tcacaaatcacaatttttctattcacattgtttaattctttaacattgtcacacatactcatgaaaacaattgaaaaatcgttagcagataaattttcta |
9949779 |
T |
|
| Q |
299 |
gataattagaccaacctgtgagtgagactccattaccaagtgtaagattcgcatgaaactcacgatccacagtaccag |
376 |
Q |
| |
|
||| |||| ||| |||||| | | |||||||||||||||| || || ||| |||||||||| |||||||| |
|
|
| T |
9949780 |
aataggcagacaaactaacgagtgataattcattaccaagtgtaagcatcacacaaaattcacgatccaaagtaccag |
9949857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 6e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 199 - 482
Target Start/End: Original strand, 21687478 - 21687761
Alignment:
| Q |
199 |
tcacaaaccacaatattgttcttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaatttccta |
298 |
Q |
| |
|
|||||||||||||| || |||||||| || |||||||| |||||||||| |||| || ||| ||||||||||| |||||| |||||||||| ||||||| |
|
|
| T |
21687478 |
tcacaaaccacaatctttctcttcactgtgtttaattctttaacattgtcacacatacccataaaaacaattggaaaattgttagcagagaagtttccta |
21687577 |
T |
|
| Q |
299 |
gataattagaccaacctgtgagtgagactccattaccaagtgtaagattcgcatgaaactcacgatccacagtaccagcagcaacagttgtcaaccaagg |
398 |
Q |
| |
|
|||| |||| |||| |||||||||||||||||||||||||||| | | | ||| |||||||||| ||||||||||||||||||| ||| ||| || |
|
|
| T |
21687578 |
gatagaaagacaaaccagtgagtgagactccattaccaagtgtaacagttcctaaaaattcacgatccaaagtaccagcagcaacagttatcacccatgg |
21687677 |
T |
|
| Q |
399 |
tgttccattgcgaagagttttaaaatcggggccgtcattacctgctgaacaagacacaaaaatacctttttccatagctgcaaa |
482 |
Q |
| |
|
| ||||||| ||| || |||||| ||| || | ||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21687678 |
tattccattatgaatagatttaaacgagggtccattattacctgcagaagtagacacaaaaatacctttttccatagctgcaaa |
21687761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 508
Target Start/End: Complemental strand, 30099332 - 30099260
Alignment:
| Q |
436 |
ttacctgctgaacaagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcat |
508 |
Q |
| |
|
|||||||| ||| | || |||| ||| |||||||||||||||||||| || |||||||| || |||||||||| |
|
|
| T |
30099332 |
ttacctgcagaagatgaaacaacaatccctttttccatagctgcaaatgaagctattgctataggatcttcat |
30099260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 508
Target Start/End: Original strand, 30091581 - 30091653
Alignment:
| Q |
436 |
ttacctgctgaacaagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcat |
508 |
Q |
| |
|
|||||||| ||| | || |||| ||| ||||| ||||||||||||||||| |||||||| || | |||||||| |
|
|
| T |
30091581 |
ttacctgcagaagacgaaacaacaatccctttctccatagctgcaaaagaagctattgctatagcatcttcat |
30091653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University