View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6530_low_3 (Length: 528)
Name: NF6530_low_3
Description: NF6530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6530_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 29141848 - 29142052
Alignment:
| Q |
13 |
aatatatcaagcgagaattttctcactagtacataacaaaaggaccttgcatgagtatacaaggtttttgctagttacaccctctttttatctagttaca |
112 |
Q |
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| T |
29141848 |
aatatatcaagcaagaattttctcactagtacataacaaaaggaccttgcatgagtatacaaggtttttgctagttacaccctctttttatctagttaca |
29141947 |
T |
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| Q |
113 |
cctgctacaaattttaaacataagaaaaggaacaatatattcttgtaactaattcaaattttcaaaacacttaccagaacatccacaaccacatctcctt |
212 |
Q |
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| T |
29141948 |
cctgctacaaattttaaacataagaaaaggaacaatatattcttgtaactaattcaaattttc-aaacactaaccagaacatccacaaccacatctcctt |
29142046 |
T |
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| Q |
213 |
ctcttt |
218 |
Q |
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|||||| |
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| T |
29142047 |
ctcttt |
29142052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 266 - 511
Target Start/End: Original strand, 29142140 - 29142384
Alignment:
| Q |
266 |
taagttttttatttagtaatttagatttggagatttctacgaattaatagggatacttttaagagaatgaaattcacgtatgattgggaannnnnnnnna |
365 |
Q |
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| T |
29142140 |
taagttttttatttagtaatttagatttggagatttctacgaattaataaggatacttttaagagaatgaaattcacgtatgattgggaattttttttta |
29142239 |
T |
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| Q |
366 |
aaataagtatatgaactcatttcactcaagtgtacataaacattttttgttgaatgattttgtgtatcgtttttcatggttgagaatcgtacatatacgt |
465 |
Q |
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|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
29142240 |
aa-taagtatatgaactcatttcacacaagtgtacataaacattttttgttgaatgattttgtgtatcgtttttcatggttgagaatcgtacctaaacgt |
29142338 |
T |
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| Q |
466 |
tattcatgtgcatgtacttaaattcaattcaagcatatatacttaa |
511 |
Q |
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| T |
29142339 |
aattcatgtgcatttactttaactcaattcaagcatatatacttaa |
29142384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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