View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6530_low_5 (Length: 371)
Name: NF6530_low_5
Description: NF6530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6530_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 21259152 - 21258804
Alignment:
| Q |
1 |
tctcctgtatgtaccctcccctcgttacctaaagtttgttttgtggcctctagattgttataataacctgaattattgtataggaaaagtttcatatg-a |
99 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21259152 |
tctcctgtatgtacgcacccctcgttacctaaagtttgttttgtggcctctagattgttataataacctgaattattgtataggaaaagtttcatatgga |
21259053 |
T |
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| Q |
100 |
agatatttacatataatacaaataaatggcaacttttacatgaagtaaaacatgtcaactctttgcattgtagtgaaaaacataaaatctaacaagaaaa |
199 |
Q |
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| T |
21259052 |
agatatttacata--atacaaataaatggcaacttttacatgaagtaaaacatgtcaactctttgcattgtagtgaaaaacataaaatctaacaagaaaa |
21258955 |
T |
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| Q |
200 |
atccaaattgaaattccaatactcttcaacgaagaaacatcatatttcccaaccacactctgtttcgccaaagcaagattcatcgatggcacaacccaca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21258954 |
atccaaattgaaattccaatactcttcaacgaagaaacatcatatttcccaaccacactctgtttcgccaaagcaagattcatcgatggcacaacccaca |
21258855 |
T |
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| Q |
300 |
aagttgtcattctatacttttcaatcaccttcaaaaaccctctaactcaaa |
350 |
Q |
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| T |
21258854 |
aagttgtcactctatacttttcaatcaccttcaaaaaccctctaactcaaa |
21258804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 215 - 354
Target Start/End: Complemental strand, 21243174 - 21243034
Alignment:
| Q |
215 |
ccaatactcttcaacgaagaaacatcatatttcccaaccacactctgtttcgccaaagcaagattcatcgatggcacaacccacaaagttgtcattctat |
314 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| | |||| | ||| |
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| T |
21243174 |
ccaatactcttcaaagaagaaacatcatatttcccaaccacactctgtttcgctaaagcaagaatcatcggtggcacaacccacaagttcgtcactttat |
21243075 |
T |
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| Q |
315 |
acttttcaatcaccttca-aaaaccctctaactcaaacctc |
354 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||| |
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| T |
21243074 |
acttctcaatcaccttcaaaaaaccctctaactcaaacctc |
21243034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 21250733 - 21250665
Alignment:
| Q |
29 |
ctaaagtttgttttgtggcctctagattgttataataacctgaattattgtataggaaaagtttcatat |
97 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21250733 |
ctaaagtttgttttgtggcctctcgattgttataataacctgaaatattgtataggaaaagtttcatat |
21250665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 21254874 - 21254806
Alignment:
| Q |
29 |
ctaaagtttgttttgtggcctctagattgttataataacctgaattattgtataggaaaagtttcatat |
97 |
Q |
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| T |
21254874 |
ctaaagtttgttttgtggcctctcgattgttataataacctgaaatattgtataggaaaagtttcatat |
21254806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 21243843 - 21243745
Alignment:
| Q |
1 |
tctcctgtatgtaccctcccctcgttacctaaagtttgttttgtggcctctagattgttataataacctgaatta-ttgtataggaaaagtttcatatg |
98 |
Q |
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||||| ||||| |||| |||||| ||| ||||||||||||||||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||| |
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| T |
21243843 |
tctccggtatgcacccacccctcattatctaaagtttgttttgtggcctctcgattgttgtaataacctgaaatatttgtataggaaaagtttcatatg |
21243745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 354
Target Start/End: Complemental strand, 21254357 - 21254297
Alignment:
| Q |
294 |
cccacaaagttgtcattctatacttttcaatcaccttcaaaaaccctctaactcaaacctc |
354 |
Q |
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|||||||| | |||| ||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
21254357 |
cccacaaattcgtcactctatgcttctcaatcaccttcaaaaaccctctaactcaaacctc |
21254297 |
T |
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