View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6530_low_6 (Length: 362)
Name: NF6530_low_6
Description: NF6530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6530_low_6 |
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| [»] chr3 (4 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 30 - 362
Target Start/End: Original strand, 10114132 - 10114463
Alignment:
| Q |
30 |
gggaaagattggcgcacataaactaatttattgaatagctttttctgtgtaaatagttaagaatgaaatctcttttgaattgcaatctcccaattatatt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10114132 |
gggaaagattggcgcacataaactaatttattgaatagctttttctgtgtaaatagttaagaatgaaatctcttttgaattgcaatctcccaattatatt |
10114231 |
T |
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| Q |
130 |
gtaaatgtttaatgtcacggtataaaacaatatgaaatttattgacacaatatttcaagtactaccagaaaattcccccccnnnnnnnnnnnnnnnnnnn |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10114232 |
gtaaatgtttaatgtcacggtataaaacaatatgaaatttattgacacaatatttcaagtactaccagaaaatt-cccccctttttttttctttcttttt |
10114330 |
T |
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| Q |
230 |
ctagaccacaaaaaggccttgtattttttcggtacatcaatcaatacttcactaaatatgataaaaccaaaaatattctatttatgaaaacttaatagag |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10114331 |
ctagaccacaaaaaggccttgtattttttcggtacatcaatcaatacttcactaaatatgataaaaccaaaaatattctatttatgaaaacttaatagag |
10114430 |
T |
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| Q |
330 |
aatttcatatctgatataacttgacattgcaaa |
362 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
10114431 |
aatttcatatctgatataacttgacattgcaaa |
10114463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 30 - 362
Target Start/End: Original strand, 10251235 - 10251562
Alignment:
| Q |
30 |
gggaaagattggcgcacataaactaatttattgaatagctttttctgtgtaaatagttaagaatgaaatctcttttgaattgcaatctcccaattatatt |
129 |
Q |
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| T |
10251235 |
gggaaagattggtgcacataaactaatttattgaatagctttttctgtgtaaatagttaagaatgaaatctcttttgaattgcaatctcccaattatatt |
10251334 |
T |
|
| Q |
130 |
gtaaatgtttaatgtcacggtataaaacaatatgaaatttattgacacaatatttcaagtactaccagaaaattcccccccnnnnnnnnnnnnnnnnnnn |
229 |
Q |
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| T |
10251335 |
gtaaatgtttaatgtcacggtataaaacaatatgaaatttattgacacaatatttcaagtactaccagaaaattccccc-----ttttttttttcttttt |
10251429 |
T |
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| Q |
230 |
ctagaccacaaaaaggccttgtattttttcggtacatcaatcaatacttcactaaatatgataaaaccaaaaatattctatttatgaaaacttaatagag |
329 |
Q |
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| T |
10251430 |
ctagaccacaaaaaggccttgtattttttcggtacatcaatcaatacttcactaaatatgataaaaccaaaaatattctatttatgaaaacttaatagag |
10251529 |
T |
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| Q |
330 |
aatttcatatctgatataacttgacattgcaaa |
362 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
10251530 |
aatttcatatatgatataacttgacattgcaaa |
10251562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 10114054 - 10114083
Alignment:
| Q |
10 |
tgagatgaatgaatagctttgggaaagatt |
39 |
Q |
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| T |
10114054 |
tgagatgaatgaatagctttgggaaagatt |
10114083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 10251157 - 10251186
Alignment:
| Q |
10 |
tgagatgaatgaatagctttgggaaagatt |
39 |
Q |
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| T |
10251157 |
tgagatgaatgaatagctttgggaaagatt |
10251186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 30 - 362
Target Start/End: Complemental strand, 16014324 - 16014000
Alignment:
| Q |
30 |
gggaaagattggcgcacataaactaatttattgaatagctttttctgtgtaaatagttaagaatgaaatctcttttgaattgcaatctcccaattatatt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16014324 |
gggaaagattggcgcacataaactaatttattgaatagctttttctgtgtaaatagttaagaatgaaatctcttttgaattgcaatctcccaattatatt |
16014225 |
T |
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| Q |
130 |
gtaaatgtttaatgtcacggtataaaacaatatgaaatttattgacacaatatttcaagtactaccagaaaattcccccccnnnnnnnnnnnnnnnnnnn |
229 |
Q |
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|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16014224 |
gtaaatgtttaatgtcac-gtataaaacagtatgaaatttattgacacaatatttcaagtactaccagaaaattccccc-------ttttttttcttttt |
16014133 |
T |
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| Q |
230 |
ctagaccacaaaaaggccttgtattttttcggtacatcaatcaatacttcactaaatatgataaaaccaaaaatattctatttatgaaaacttaatagag |
329 |
Q |
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| T |
16014132 |
ctagaccacaaaaaggccttttattttttcggtacatcaaacaatacttcactaaatatgataaaaccaaaaatattctatttatgaaaacttaatagag |
16014033 |
T |
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| Q |
330 |
aatttcatatctgatataacttgacattgcaaa |
362 |
Q |
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| T |
16014032 |
aatttcatatctgatataacttgacattgcaaa |
16014000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 16014405 - 16014376
Alignment:
| Q |
10 |
tgagatgaatgaatagctttgggaaagatt |
39 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
16014405 |
tgagatgaatgaatagctttgggaaagatt |
16014376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 21404757 - 21404806
Alignment:
| Q |
161 |
atgaaatttattgacacaatatttcaagtactaccagaaaattccccccc |
210 |
Q |
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| T |
21404757 |
atgaaatttattgacacaatatttcaagtactaccataaaattccacccc |
21404806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 271 - 362
Target Start/End: Original strand, 21404864 - 21404953
Alignment:
| Q |
271 |
caatacttcactaaatatgataaaaccaaaaatattctatttatgaaaacttaatagagaatttcatatctgatataacttgacattgcaaa |
362 |
Q |
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||||| ||||||||| ||||||| |||||| ||||| |||| || |||||||||||| ||||||||||||||| |||||| ||||||||| |
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| T |
21404864 |
caatatttcactaaacgtgataaatccaaaagtattcaatttttgtaaacttaataga--atttcatatctgatagaacttgtcattgcaaa |
21404953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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