View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6530_low_9 (Length: 301)
Name: NF6530_low_9
Description: NF6530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6530_low_9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 301
Target Start/End: Complemental strand, 2723056 - 2722770
Alignment:
| Q |
14 |
atataatgaaatgtctttcctgatttactatattgcaatcaaataaaatcagaaaataaatataagataaacaaaaagtcaggacacataagagatattt |
113 |
Q |
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| T |
2723056 |
atataatgaaatgtctttcctaatttactatattgcaatcaaataaaatcaaaaaataaatataagataaacaaaaagtcaggacacataagagatattt |
2722957 |
T |
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| Q |
114 |
acataacaaaaatttatgaaaatttatattatttagagattgttaacctaaatcgacttannnnnnnaaaatcttttaataagttataactaaaaaattg |
213 |
Q |
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| T |
2722956 |
acataacaaaaatttatgaaaaattatattatttagagattgttaacctaaatcgactta-ttttttaaagtcttttaataagttataactaaaaaattg |
2722858 |
T |
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| Q |
214 |
ttatcctatacattttgctaaaatacttcttctaaaaaataaataggtgtaagttctttagtcttacgtttctaagtaacttaataga |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
2722857 |
ttatcctatacattttgctaaaatacttcttctaaaaaataaataggtgtaagttctttagtcttatgtttgtaagtaacttaataga |
2722770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 264
Target Start/End: Original strand, 21519803 - 21519840
Alignment:
| Q |
227 |
tttgctaaaatacttcttctaaaaaataaataggtgta |
264 |
Q |
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||||||||||||||||||||||||||||| | |||||| |
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| T |
21519803 |
tttgctaaaatacttcttctaaaaaataagtgggtgta |
21519840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 26211424 - 26211387
Alignment:
| Q |
227 |
tttgctaaaatacttcttctaaaaaataaataggtgta |
264 |
Q |
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| T |
26211424 |
tttgctaaaatacttcttctaaaaaataagtaggtgta |
26211387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 264
Target Start/End: Original strand, 2586430 - 2586467
Alignment:
| Q |
227 |
tttgctaaaatacttcttctaaaaaataaataggtgta |
264 |
Q |
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|||||||||||||| |||||||||||||| |||||||| |
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| T |
2586430 |
tttgctaaaatactccttctaaaaaataagtaggtgta |
2586467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 27348271 - 27348234
Alignment:
| Q |
227 |
tttgctaaaatacttcttctaaaaaataaataggtgta |
264 |
Q |
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||||||||||||||||||||||||||||| | |||||| |
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| T |
27348271 |
tttgctaaaatacttcttctaaaaaataagttggtgta |
27348234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 43236305 - 43236269
Alignment:
| Q |
228 |
ttgctaaaatacttcttctaaaaaataaataggtgta |
264 |
Q |
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|||||||||||||||||||||||||||| | |||||| |
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| T |
43236305 |
ttgctaaaatacttcttctaaaaaataagtgggtgta |
43236269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 42556479 - 42556443
Alignment:
| Q |
228 |
ttgctaaaatacttcttctaaaaaataaataggtgta |
264 |
Q |
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||||||||||||| |||||||||||||| |||||||| |
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| T |
42556479 |
ttgctaaaatactccttctaaaaaataagtaggtgta |
42556443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 26158379 - 26158343
Alignment:
| Q |
228 |
ttgctaaaatacttcttctaaaaaataaataggtgta |
264 |
Q |
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||||||||||||| |||||||||||||| |||||||| |
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| T |
26158379 |
ttgctaaaatactccttctaaaaaataagtaggtgta |
26158343 |
T |
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