View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6532_high_6 (Length: 244)
Name: NF6532_high_6
Description: NF6532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6532_high_6 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 38180103 - 38180330
Alignment:
| Q |
17 |
actttagggttggtttcttcatctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggt |
116 |
Q |
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| T |
38180103 |
actttagggttggtttcttcatatagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggt |
38180202 |
T |
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| Q |
117 |
cacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaata |
216 |
Q |
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| T |
38180203 |
cacggctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgacgtagtcaccatgctcatgaaagtaata |
38180302 |
T |
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| Q |
217 |
atagtagatatcaaaaaccgttgcagct |
244 |
Q |
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| T |
38180303 |
atagtagatatcaaaaactgttgcagct |
38180330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 38184776 - 38184999
Alignment:
| Q |
21 |
tagggttggtttcttcatctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacg |
120 |
Q |
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| T |
38184776 |
tagggttggtttcttcatctagaacttgaatttgttctttgaaagatcgagtagcgatagtatatatatttgaagataataaaaaagagggaaggtcacg |
38184875 |
T |
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| Q |
121 |
actttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatag |
220 |
Q |
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| T |
38184876 |
gctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgttcatgaaagtaataatag |
38184975 |
T |
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| Q |
221 |
tagatatcaaaaaccgttgcagct |
244 |
Q |
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| T |
38184976 |
tagatatcaaaaaccgttgcagct |
38184999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 47 - 240
Target Start/End: Original strand, 38170319 - 38170512
Alignment:
| Q |
47 |
tgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctg |
146 |
Q |
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| T |
38170319 |
tgaatttgctctttgagagatggaagagcaaaagtgtatgtatttgaagccaataaaaaagagggaaggtcgcggcttttaagagagaatgacaatcccg |
38170418 |
T |
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| Q |
147 |
gtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaaccgttgc |
240 |
Q |
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| T |
38170419 |
gtaatgatattaaacacgtttcatcctttgatttgtttgtgatgtagtcaccgtgttcatgaaagtaataatagaatatatcaaacaccgttgc |
38170512 |
T |
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