View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6532_low_2 (Length: 361)
Name: NF6532_low_2
Description: NF6532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6532_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 37027624 - 37027949
Alignment:
| Q |
18 |
agaagctactccatcaaatcatggaagaaactcaaattttcatcatttggctactcagacttagattcttcatatggtactccttcttctcaaccacttc |
117 |
Q |
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| T |
37027624 |
agaagctactccatcaaatcatggaagaaactcaaattttcatcatttggctactcagacttagattcttcatatggtactccttcttctcaaccacttc |
37027723 |
T |
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| Q |
118 |
cacctttcaattcacttgctccacaacctacctctctaccaccttattcacctgttccaaacccacctcatgatgtttttagaccaccaccaagtcctaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37027724 |
cacctttcaattcacttgctccacaacctacctctctaccaccttattcacctgttccaaacccacctcatgatgtttttagaccaccaccaagtcctaa |
37027823 |
T |
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| Q |
218 |
aaccgttgtcacaatatcgccgccgccacctccaagccaatcaaaacatgttccaagcccacctaaaagtattatctacccacctcaagtatacttgcct |
317 |
Q |
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|||| |||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
37027824 |
aaccattgttacaatgtcgccgccgccacctccaagcccatcaaaacatgttccaagcccacctaaaagtgttataggcccacctcaagtatacttgcca |
37027923 |
T |
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| Q |
318 |
cctattgtttatccaccaccaccttc |
343 |
Q |
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|||||||||||||||||||||||||| |
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| T |
37027924 |
cctattgtttatccaccaccaccttc |
37027949 |
T |
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