View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6532_low_3 (Length: 298)

Name: NF6532_low_3
Description: NF6532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6532_low_3
NF6532_low_3
[»] chr3 (3 HSPs)
chr3 (10-280)||(40200575-40200845)
chr3 (9-280)||(40208208-40208479)
chr3 (10-280)||(40204076-40204346)
[»] chr1 (1 HSPs)
chr1 (65-280)||(10299228-10299443)
[»] chr5 (1 HSPs)
chr5 (176-210)||(6250143-6250177)


Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 280
Target Start/End: Original strand, 40200575 - 40200845
Alignment:
Q  10 aagaaaatatccaaggaatattgtagaattgactttggttaattttgtatgaaacagggcaattgaaaggtcaaattgtttccatagaagtgggggaaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40200575 aagaaaatatccaaggaatattgtagaattgactttggttaattttgtatgaaacagggcaattgaaaggtcaaattgtttccatagaagtgggggaaaa 40200674  T
Q  110 gatccatgtcacatgaacagcaatatttacatgatttcatttggtgcagtacaaattatattctctcaaattccagattttgatcaattatggtggctct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40200675 gatccatgtcacatgaacagcaatatttacatgatttcatttggtgcagtacaaattatattctctcaaattccagattttgatcaattatggtggctct 40200774  T
Q  210 ccagtttagctgctgttatgtccttcacatactccacaattggtcttggccttggtattggaaaagttata 280  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40200775 ccagtttagctgctgttatgtcctttacatactccacaattggtcttggccttggtattggaaaagttata 40200845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 280
Target Start/End: Original strand, 40208208 - 40208479
Alignment:
Q  9 gaagaaaatatccaaggaatattgtagaattgactttggttaattttgtatgaaacagggcaattgaaaggtcaaattgtttccatagaagtgggggaaa 108  Q
    ||||||||||||||| |||||| ||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40208208 gaagaaaatatccaaagaatatggtataattaactttggttaattctgtatgaaacagggcaattgaaaggtcaaattgtttccatagaagtggtggaaa 40208307  T
Q  109 agatccatgtcacatgaacagcaatatttacatgatttcatttggtgcagtacaaattatattctctcaaattccagattttgatcaattatggtggctc 208  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  40208308 agatccatgtcacatgaaaagcaatatttacatgatttcatttggtgcagtgcaaattatattctctcaaattccagattttgatcaattgtggtggctc 40208407  T
Q  209 tccagtttagctgctgttatgtccttcacatactccacaattggtcttggccttggtattggaaaagttata 280  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40208408 tccagtttagctgctgttatgtcctttacatactccacaattggtcttggccttggtattggaaaagttata 40208479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 280
Target Start/End: Original strand, 40204076 - 40204346
Alignment:
Q  10 aagaaaatatccaaggaatattgtagaattgactttggttaattttgtatgaaacagggcaattgaaaggtcaaattgtttccatagaagtgggggaaaa 109  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40204076 aagaaaatatccaaggaatatggtagaattgactttggttaattttgtatgaaacagggcaattgaaaggtcaaattgtttccatagaagtggtggaaaa 40204175  T
Q  110 gatccatgtcacatgaacagcaatatttacatgatttcatttggtgcagtacaaattatattctctcaaattccagattttgatcaattatggtggctct 209  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40204176 gatccatgtcacatgaatagcaatatttacatgatttcatttggtgcagtgcaaattatattctctcaaattccagattttgatcaaatatggtggctct 40204275  T
Q  210 ccagtttagctgctgttatgtccttcacatactccacaattggtcttggccttggtattggaaaagttata 280  Q
    ||||||||||| ||||||||||||| | ||||||||||||||| ||||||||||||||||| |||||||||    
T  40204276 ccagtttagctactgttatgtcctttatatactccacaattggccttggccttggtattgggaaagttata 40204346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 65 - 280
Target Start/End: Complemental strand, 10299443 - 10299228
Alignment:
Q  65 agggcaattgaaaggtcaaattgtttccatagaagtgggggaaaagatccatgtcacatgaacagcaatatttacatgatttcatttggtgcagtacaaa 164  Q
    ||||||||| ||||||| ||||||||||| || ||||| |||||| ||||||| ||||||||  | || |||||||||||||||||||||   ||  | |    
T  10299443 agggcaattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaacatttacatgatttcatttggtattgtggaga 10299344  T
Q  165 ttatattctctcaaattccagattttgatcaattatggtggctctccagtttagctgctgttatgtccttcacatactccacaattggtcttggccttgg 264  Q
    |  | |||||||||||||| || |||||||| ||||||||||||||   | |||||||||||||||||||||||||||| || ||||| || || |||||    
T  10299343 tctttttctctcaaattcctgactttgatcagttatggtggctctctgctctagctgctgttatgtccttcacatactcaactattggcctcggtcttgg 10299244  T
Q  265 tattggaaaagttata 280  Q
    ||| || |||||||||    
T  10299243 tatcggtaaagttata 10299228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 6250143 - 6250177
Alignment:
Q  176 caaattccagattttgatcaattatggtggctctc 210  Q
    ||||||||||||||||||||| |||||||||||||    
T  6250143 caaattccagattttgatcaaatatggtggctctc 6250177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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