View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6532_low_5 (Length: 256)
Name: NF6532_low_5
Description: NF6532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6532_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 48925356 - 48925271
Alignment:
| Q |
165 |
aagtcaagtcaatttgccatagttacattgagnnnnnnnn-agtcatttaaccgttttttaggcgttaaatctattgcagaataat |
249 |
Q |
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| T |
48925356 |
aagtcaagtcaatttgccatagttacattgagtttttttttagtcatttaaccgttttttaggcgttaaatctattgcataataat |
48925271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 48925442 - 48925406
Alignment:
| Q |
109 |
aacttccatgctttcatttccccttcacctccaggta |
145 |
Q |
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| T |
48925442 |
aacttccatgctttcatttccccttcacctccaggta |
48925406 |
T |
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