View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6533_high_10 (Length: 582)

Name: NF6533_high_10
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6533_high_10
NF6533_high_10
[»] chr8 (4 HSPs)
chr8 (23-281)||(7554755-7555024)
chr8 (410-535)||(7554471-7554599)
chr8 (271-335)||(7554678-7554742)
chr8 (433-528)||(29526870-29526965)
[»] scaffold0181 (1 HSPs)
scaffold0181 (439-546)||(12760-12867)
[»] chr1 (1 HSPs)
chr1 (433-557)||(2091041-2091165)
[»] chr5 (2 HSPs)
chr5 (28-106)||(41455734-41455813)
chr5 (433-547)||(27528437-27528551)
[»] chr6 (1 HSPs)
chr6 (433-508)||(2853776-2853851)
[»] chr4 (1 HSPs)
chr4 (433-547)||(28943627-28943741)
[»] chr3 (1 HSPs)
chr3 (469-530)||(9706084-9706145)
[»] chr2 (1 HSPs)
chr2 (433-501)||(15318208-15318276)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 23 - 281
Target Start/End: Complemental strand, 7555024 - 7554755
Alignment:
Q  23 gttggtttttctcttttgataccgattcactttgtatatttgtagtggtatc-taggcactccttatgtttggggactactattgatgtcgtaatat--- 118  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||       
T  7555024 gttggtttttctcttttgatactgattcactttgtatatttgtagtggtatcctaggcactccttatatttgaggactactattgatgtcgtaatataat 7554925  T
Q  119 -------tggcttgttcaaataaaagtaaataatgaacaacacaaataaaataagttcaaattaaatctactgcaatactcaaaatatgttatagagaga 211  Q
           || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7554924 ttaattttgccttgttcaaataaaaataaataatgaacaacacaaataaaataagttcaaattaaatctactgcaatactcaaaatatgttatagagaga 7554825  T
Q  212 gctatggacagtcgagttttagttaactattttttcgcaattacattcctagagataattatgaaatatt 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7554824 gctatggacagtcgagttttagttaactattttttcgcaattacattcctagagataattatgatatatt 7554755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 410 - 535
Target Start/End: Complemental strand, 7554599 - 7554471
Alignment:
Q  410 ctatcaaagatatagaagtttatcaaggtaaaaatgttatcttttcgatggttgaaggcgggtctcattacattcgcgttcagctatcatgacggg---- 505  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||        
T  7554599 ctatcaaagacatagaagtttatcaaggtaaaaatgttatcttttcggtggttgaaggc-ggtctcattacattcgcgttcagctatcatgacgggtggt 7554501  T
Q  506 tggctgcatcttttatcttgtatggatctg 535  Q
    ||||||||||||||||||||||||| ||||    
T  7554500 tggctgcatcttttatcttgtatgggtctg 7554471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 7554742 - 7554678
Alignment:
Q  271 tatgaaatatttatgttatttttgtataaaaatgagaacgaactaaaattattgaagtagttttg 335  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7554742 tatgaaatatttatgttatttttgtataaaaatgaaaacgaactaaaattattgaagtagttttg 7554678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 433 - 528
Target Start/End: Original strand, 29526870 - 29526965
Alignment:
Q  433 caaggtaaaaatgttatcttttcgatggttgaaggcgggtctcattacattcgcgttcagctatcatgacgggtggctgcatcttttatcttgtat 528  Q
    |||||||||| || |||||||    ||||||||||||||||||||||| ||||| || |||||| ||||| |||||  ||||| ||||||||||||    
T  29526870 caaggtaaaattgctatctttctagtggttgaaggcgggtctcattactttcgcttttagctattatgactggtggaggcatcctttatcttgtat 29526965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 439 - 546
Target Start/End: Complemental strand, 12867 - 12760
Alignment:
Q  439 aaaaatgttatcttttcgatggttgaaggcgggtctcattacattcgcgttcagctatcatgacgggtggctgcatcttttatcttgtatggatctgatg 538  Q
    ||||||| ||||||| || |||||||||| |  ||| |||||||||||||||| |||||||||| | |||  ||||| |||||||||||||| ||| |||    
T  12867 aaaaatgctatctttccggtggttgaaggtgaatcttattacattcgcgttcaactatcatgactgatggaggcatcatttatcttgtatgggtctaatg 12768  T
Q  539 ttgtaatt 546  Q
    ||||||||    
T  12767 ttgtaatt 12760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 433 - 557
Target Start/End: Original strand, 2091041 - 2091165
Alignment:
Q  433 caaggtaaaaatgttatcttttcgatggttgaaggcgggtctcattacattcgcgttcagctatcatgacgggtggctgcatcttttatcttgtatggat 532  Q
    |||||||||||||  |||||  | |||||||||||||  ||||||||| |||| |||||||||||||||| |||||  |  |  ||||||||||| || |    
T  2091041 caaggtaaaaatgacatcttaccaatggttgaaggcgaatctcattactttcgtgttcagctatcatgactggtggaggtcttctttatcttgtacgggt 2091140  T
Q  533 ctgatgttgtaatttttgttggttt 557  Q
    || |||||||||||| |||| ||||    
T  2091141 ctaatgttgtaatttatgtttgttt 2091165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 41455734 - 41455813
Alignment:
Q  28 tttttctcttttgataccgattcactttgtatatttgtagtggtat-ctaggcactccttatgtttggggactactattg 106  Q
    ||||| ||||||||||| |||||||||||||||||||||||||| | |||||||| | || || ||||| ||||||||||    
T  41455734 tttttttcttttgatactgattcactttgtatatttgtagtggtctcctaggcacacattgtgcttgggaactactattg 41455813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 433 - 547
Target Start/End: Complemental strand, 27528551 - 27528437
Alignment:
Q  433 caaggtaaaaatgttatcttttcgatggttgaaggcgggtctcattacattcgcgttcagctatcatgacgggtggctgcatcttttatcttgtatggat 532  Q
    |||||||||| ||  |||||| |  ||||||||||||  ||||||||| |||| |||||||||||||||| |||||  |  || |||||||||||||| |    
T  27528551 caaggtaaaagtgacatctttcccgtggttgaaggcgaatctcattactttcgtgttcagctatcatgactggtggaggtctcctttatcttgtatgggt 27528452  T
Q  533 ctgatgttgtaattt 547  Q
    || ||| ||||||||    
T  27528451 ctaatgctgtaattt 27528437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 508
Target Start/End: Original strand, 2853776 - 2853851
Alignment:
Q  433 caaggtaaaaatgttatcttttcgatggttgaaggcgggtctcattacattcgcgttcagctatcatgacgggtgg 508  Q
    |||||||||||||||||||||    ||||||||||||| ||||||||| ||||| || | |||||||||| |||||    
T  2853776 caaggtaaaaatgttatctttctagtggttgaaggcggatctcattactttcgcatttaactatcatgactggtgg 2853851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 547
Target Start/End: Original strand, 28943627 - 28943741
Alignment:
Q  433 caaggtaaaaatgttatcttttcgatggttgaaggcgggtctcattacattcgcgttcagctatcatgacgggtggctgcatcttttatcttgtatggat 532  Q
    ||||||||||||   |||||| || ||||||||||||  |||| |||| |||| |||||||||||||||  |||||  |  || |||||||||||||| |    
T  28943627 caaggtaaaaattacatctttccggtggttgaaggcgaatctccttaccttcgtgttcagctatcatgattggtggaggtctcctttatcttgtatgggt 28943726  T
Q  533 ctgatgttgtaattt 547  Q
    || ||| ||||||||    
T  28943727 ctaatgctgtaattt 28943741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 530
Target Start/End: Complemental strand, 9706145 - 9706084
Alignment:
Q  469 gggtctcattacattcgcgttcagctatcatgacgggtggctgcatcttttatcttgtatgg 530  Q
    |||||| ||||| ||| ||||||||||||||||| ||||||  |||| |||||||| |||||    
T  9706145 gggtctgattactttcacgttcagctatcatgactggtggcgacatcctttatcttatatgg 9706084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 433 - 501
Target Start/End: Complemental strand, 15318276 - 15318208
Alignment:
Q  433 caaggtaaaaatgttatcttttcgatggttgaaggcgggtctcattacattcgcgttcagctatcatga 501  Q
    |||||||| |||| ||||||| |  |||||||||||| ||||| | || ||||| ||||||||||||||    
T  15318276 caaggtaataatgctatctttccagtggttgaaggcgagtctcttaactttcgctttcagctatcatga 15318208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University