View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_high_11 (Length: 575)
Name: NF6533_high_11
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 561; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 1 - 565
Target Start/End: Original strand, 1946321 - 1946885
Alignment:
| Q |
1 |
tccattccaacatgttgtactccttgacgcaccctcattttcgcctgcgcgtctggaggtagactagcccattctggcttccatgtgcaaattgaagcag |
100 |
Q |
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| T |
1946321 |
tccattccaacatgttgtactccttgacgcaccctcattttcgcctgcgcgtctggaggtagactagcccattctggcttccatgtgcaaattgaagcag |
1946420 |
T |
|
| Q |
101 |
gaccataagtttcagtcataccatatgcatgagttacatgaaatcctagttcttccgcactagaaaaaatatctggtggtggtggagcaccgccactcat |
200 |
Q |
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| T |
1946421 |
gaccataagtttcagtcataccatatgcatgagttacatgaaatcctagttcttccgcactagaaaaaatatctggtggtggtggagcaccgccactcat |
1946520 |
T |
|
| Q |
201 |
cactaccaccttcccagaaagcagcttcctaattggtgaatttattaacatgttcagaagtgctggtgctcctcccatgtgagttacattgtgcttaaag |
300 |
Q |
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| T |
1946521 |
cactaccaccttcccagaaagcggcttcctaattggtgaatttattaacatgttcagaagtgctggtgctcctcccatgtgagttacattgtgcttaaag |
1946620 |
T |
|
| Q |
301 |
atattgtcaaatatatctttatcagttacatttcttaggcaaacatttgtgccaccttgagcagcaatactccaagggacacaccatccattgcaatgat |
400 |
Q |
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| T |
1946621 |
atattgtcaaatatatctttatcagttacatttcttaggcaaacatttgtgccaccttgagcagcaatactccaagggacacaccatccattgcaatgat |
1946720 |
T |
|
| Q |
401 |
acataggaacacaccataaatacactgatgttgatttcatttcattaataataattgtagccaaagaattaagataagcacctctatggctaaagattac |
500 |
Q |
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| T |
1946721 |
acataggaacacaccataaatacactgatgttgatttcatttcattaataataattgtagccaaagaattaagataagcacctctatggctaaagattac |
1946820 |
T |
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| Q |
501 |
acccttaggagttgatgtggttccagaagtgtaacttattgaaattgtatcacattcatcctttg |
565 |
Q |
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| T |
1946821 |
acccttaggagttgatgtggttccagaagtgtaacttattgaaattgtatcacattcatcctttg |
1946885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 565
Target Start/End: Original strand, 1928203 - 1928773
Alignment:
| Q |
1 |
tccattccaacatgttgtactccttgacgcaccctcattttcgcctgcgcgtctggaggtagactagcccattctggcttccatgtgcaaattgaagcag |
100 |
Q |
| |
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|||| ||||| ||||||||||||||||||| | || ||||||||||| | ||| ||| || ||| ||||||||| ||||||||||||||||| ||| |
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| T |
1928203 |
tccagtccaatatgttgtactccttgacgcgacttctttttcgcctgctcctctcgagacaggctactccattctggtttccatgtgcaaattgatccag |
1928302 |
T |
|
| Q |
101 |
gaccataagtttcagtcataccatatgcatgagttacatgaaatcctagttcttccgcactagaaaaaatatctggtggtggtggagcaccgccactcat |
200 |
Q |
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||||||||||||| |||| |||||||| |||| || || |||||||||||||||| ||| |||| | || ||||| ||||||||||| || |||| |
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| T |
1928303 |
gaccataagtttctgtcaaaccatatgaatgaactaaatcaaatcctagttcttccatcctaaaaaatacgtccggtggcggtggagcaccacctgtcat |
1928402 |
T |
|
| Q |
201 |
cactaccaccttcccagaaagcagcttcctaat------tggtgaatttattaacatgttcagaagtgctggtgctcctcccatgtgagttacattgtgc |
294 |
Q |
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|||||||||||||| | ||| |||| || || ||||| ||||||||| |||||||| || |||||| || ||| |||| ||||| |||||| |
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| T |
1928403 |
cactaccaccttcctcggaagtggctttctgatatcaggtggtgcatttattaatgagttcagaactgttggtgcaccccccgtgtgtgttactttgtgc |
1928502 |
T |
|
| Q |
295 |
ttaaagatattgtcaaatatatctttatcagttacatttcttaggcaaacatttgtgccaccttgagcagcaatactccaagggacacaccatccattgc |
394 |
Q |
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||||| |||||||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||||||| |||||| | |||||||||||||| |
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| T |
1928503 |
ttaaaaatattgtcaaatatccctttagcagttacatttctttggcaaacatttgcgccaccttgagcagcaataccccaaggaagacaccatccattgc |
1928602 |
T |
|
| Q |
395 |
aatgatacataggaacacaccataaatacactgatgttgatttcatttcattaataataattgtagccaaagaattaagataagcacctctatggctaaa |
494 |
Q |
| |
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||||| |||| |||||||||||||||||||| | | || ||||| ||||| | || ||||||||||||||||||||||||||||||||| |||||| | |
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| T |
1928603 |
aatgaaacatgggaacacaccataaatacaccggcatagacttcatctcattgagaagaattgtagccaaagaattaagataagcacctctgtggctata |
1928702 |
T |
|
| Q |
495 |
gattacacccttaggagttgatgtggttccagaagtgtaacttattgaaattgtatcacattcatcctttg |
565 |
Q |
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| |||||| |||||| ||||||| ||||||||||||||| | | ||||||| ||| |||||||| |||| |
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| T |
1928703 |
tactacacctttaggacttgatgttgttccagaagtgtaattcaaagaaattggatcccattcatcttttg |
1928773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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