View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_high_13 (Length: 529)
Name: NF6533_high_13
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 17 - 509
Target Start/End: Original strand, 48952675 - 48953179
Alignment:
| Q |
17 |
agttagatcagctgggagaactaagaccatcccagccagcgaaatcccgcatataattaattaaaatctactaagcaaaatcacacaaagggatagatgc |
116 |
Q |
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| T |
48952675 |
agttagatcagctgggagaactaagaccatcccagccagcgaaatcccgcatataat----taaaatctactaagcaaaatcacacaaagggatagatgc |
48952770 |
T |
|
| Q |
117 |
aatgaagttcgaaaggaccccccatggtacacactgaagtttgagacaagttataacacacctggtctaaatcctatcaaagagaagttgtcgagagaaa |
216 |
Q |
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| T |
48952771 |
aatgaagttcgaaaggaccccccatggtacacgctgaagtttgagacaagatataacacacctggtctaaatcctatcaaagagaagttgtcaagagaaa |
48952870 |
T |
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| Q |
217 |
aggctaaccttagttgtggtaggattccaaatatgctagatagaaaacaaag----------------gattcttctgggtgtaggtgttgccttgcaag |
300 |
Q |
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| T |
48952871 |
aggctaaccttagttgtggtaggattccaaatatgctagatagaaaacaaaggattcttcctccacaagattcttctgggtgtaagtgttgccttgcaag |
48952970 |
T |
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| Q |
301 |
caatgaacaagtagattttacctacaagattcctcaacttatttatattagaactaattgccttgcatagcaaattacatttttggaacattaaaaaata |
400 |
Q |
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| T |
48952971 |
caatgaacaagtagattttacctacaagattcctcaacttatttatattagaactaattgccttgcatagcaaattacatttttggaacattaaaaaata |
48953070 |
T |
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| Q |
401 |
tgatacagaatataatggaatatgatccaatgcattttatcccatttcagataatacactttttattgtgtcaataatcgtttttgggttcaatataggg |
500 |
Q |
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| T |
48953071 |
tgatacagaacataatggaatatgatccaatgcattttatcccatttcagatgatacactttttattgtgtcaataatcgtttttgggttcaatataggg |
48953170 |
T |
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| Q |
501 |
ttaaactag |
509 |
Q |
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| T |
48953171 |
ttaaactag |
48953179 |
T |
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