View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_high_20 (Length: 409)
Name: NF6533_high_20
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 24101553 - 24101286
Alignment:
| Q |
13 |
tgaatagagactgaaaatgaaagagacgccagtatgctggaagaaaaataataatggaatctaatgaagcattannnnnnnnaagaatgaatctaatgaa |
112 |
Q |
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| T |
24101553 |
tgaatagagactgaaaatgaaagagacgccagtatgctggaagaaaaataataatggaatctaatgaagcattattttttttaagaatgaatctaatgaa |
24101454 |
T |
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| Q |
113 |
acatgtacaggagtatcaatctattaaaatataaattggtcttttcgaaaaagaataaaaattgtacagctctaacaagagtatgaatac-nnnnnnnaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24101453 |
acatgtacaggagtatcaatctattaaaatataaattggtcttttcgaaaaagaataaaaattgtacagctctaacaagagtatgaatacttttttttaa |
24101354 |
T |
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| Q |
212 |
caaaaagagtatcaatacttgacttctgttcaaagggatcccttggaaagtattcacattattaatta |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24101353 |
caaaaagagtatcaatacttgacttctgttcaaagggatcccttggaaagtattcacattattaatta |
24101286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 296 - 393
Target Start/End: Complemental strand, 24101228 - 24101131
Alignment:
| Q |
296 |
gaaagcgaaagcgttgagtaacttttgttgttagaggttacgattcccaatcaaaaagaaaaattagtacatcacattgatttcacattattgttggt |
393 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24101228 |
gaaatcgaaagcgttgagtaacttttgttgttagaggttacgattcccaatcaaaaagaaaaattagtacatcacattgatttcacattattgttggt |
24101131 |
T |
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