View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_high_21 (Length: 398)
Name: NF6533_high_21
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 379
Target Start/End: Complemental strand, 108291 - 107924
Alignment:
| Q |
11 |
agaatatgggcatttgcaacatctttcacatacacccatcccaaagtagaatttggaaatgtttgtgtacctgtat----caaggaagtgagagagctat |
106 |
Q |
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| T |
108291 |
agaatatgggcatttgcaacatctttcacatacacccatcccaaagtagaatttggaaatgtttgtgtacctgtatgtatcaaggaagtgagagagctat |
108192 |
T |
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| Q |
107 |
tatctgcacagcagaaggacaaaattttgtcctcttgaacacaaacatatttgaagcacatagaaactgctaatattcattgaaatagcaacagaataca |
206 |
Q |
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| T |
108191 |
tatctgca-----gaaggacaaaatcttgtcctcttgaacacaaacatatttgaagcacatagaaactgctaatattcattgaaatagcaacagaataca |
108097 |
T |
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| Q |
207 |
attcaataagcaacaatggatgttggggaaaaatcgatgtcatatcaaacaaaaataacaggaaatatactctcatctacctcaacaataattgttacca |
306 |
Q |
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| T |
108096 |
attcaataatcaacaatggatgttggggaaaaatcgatgtcatatcgaacgaaaataacaggaaatatactctcatctagctcaacaataactgttacca |
107997 |
T |
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| Q |
307 |
ttacaataaaacaaaaatggtaattaattaccattaatcaggtttagaattgcagcagcacttgtgtttagga |
379 |
Q |
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| T |
107996 |
ttacaataaaacaaaaatggtaattaattaccattaatcaggtttagaattgcagcagcacttgtgtttagga |
107924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 89185 - 88978
Alignment:
| Q |
11 |
agaatatgggcatttgcaacatctttcacatacacccatcccaaagtagaatttggaaatgtttgtgtacctgtatcaaggaagtgagagagct---att |
107 |
Q |
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| T |
89185 |
agaatatgggcatttgcaacatctttcacattgacccatccaaaactagcatttggaaatgtctgtgcacctgtatcaaggaagtgaaagagcttctatt |
89086 |
T |
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| Q |
108 |
atctgcacagcagaaggacaaaattttgtcctcttgaacacaaacatatttgaagcacatagaaactgctaatattcattgaaatagcaacagaatacaa |
207 |
Q |
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| T |
89085 |
atctaca-----gaaggacaaaatcttgtcctcttgaacacaaacatatttgaagtacataaaaactgctaatattcattaaaataacaacaaaagagaa |
88991 |
T |
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| Q |
208 |
ttcaataagcaac |
220 |
Q |
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| T |
88990 |
cacaataagcaac |
88978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 326 - 379
Target Start/End: Complemental strand, 88482 - 88429
Alignment:
| Q |
326 |
gtaattaattaccattaatcaggtttagaattgcagcagcacttgtgtttagga |
379 |
Q |
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| T |
88482 |
gtaattaattaccattaatcaggtttagaattgcagcagcacttgtgtttagga |
88429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 2708144 - 2708065
Alignment:
| Q |
11 |
agaatatgggcatttgcaacatctttcacatacacccatcccaaagtagaatttggaaatgtttgtgtacctgtatcaag |
90 |
Q |
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| T |
2708144 |
agaatatgggcatttgcaacatctttcacattgacccatcaaaaactagcatttcgaaatgtttgtgcacctgtatcaag |
2708065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 88900 - 88839
Alignment:
| Q |
259 |
aaataacaggaaatatactctcatctacctcaacaataattgttaccattacaataaaacaa |
320 |
Q |
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||||||||||||||| ||||||||| | ||||||||||| || ||| |||||||| |||||| |
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| T |
88900 |
aaataacaggaaatagactctcatccagctcaacaataactgctacgattacaattaaacaa |
88839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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