View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6533_high_25 (Length: 393)

Name: NF6533_high_25
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6533_high_25
NF6533_high_25
[»] chr2 (14 HSPs)
chr2 (115-349)||(2841933-2842167)
chr2 (115-199)||(18723693-18723777)
chr2 (1-96)||(2840657-2840760)
chr2 (119-201)||(12889718-12889800)
chr2 (119-199)||(36802999-36803079)
chr2 (115-198)||(26206947-26207030)
chr2 (115-200)||(44711876-44711961)
chr2 (123-196)||(38560790-38560863)
chr2 (115-212)||(39448993-39449089)
chr2 (115-199)||(4299210-4299295)
chr2 (150-199)||(43513545-43513594)
chr2 (115-193)||(28244135-28244212)
chr2 (119-204)||(3012735-3012820)
chr2 (115-195)||(44254700-44254780)
[»] chr4 (9 HSPs)
chr4 (115-200)||(21617282-21617367)
chr4 (115-197)||(18624110-18624192)
chr4 (115-191)||(14527739-14527815)
chr4 (115-200)||(49768205-49768290)
chr4 (119-201)||(32546244-32546326)
chr4 (115-199)||(51887762-51887845)
chr4 (115-204)||(13263281-13263369)
chr4 (115-200)||(45851859-45851943)
chr4 (115-195)||(47112023-47112103)
[»] chr3 (6 HSPs)
chr3 (115-201)||(54693999-54694085)
chr3 (115-201)||(42683926-42684012)
chr3 (115-201)||(3347013-3347099)
chr3 (115-199)||(31376654-31376737)
chr3 (124-199)||(45055081-45055156)
chr3 (123-191)||(54274089-54274156)
[»] chr5 (8 HSPs)
chr5 (115-199)||(30640889-30640973)
chr5 (115-196)||(43196516-43196597)
chr5 (119-196)||(18509080-18509157)
chr5 (115-196)||(43154159-43154240)
chr5 (119-187)||(4771600-4771668)
chr5 (115-199)||(6292220-6292303)
chr5 (156-195)||(25871361-25871400)
chr5 (115-199)||(10658992-10659075)
[»] chr8 (10 HSPs)
chr8 (122-204)||(34718221-34718303)
chr8 (119-199)||(16613737-16613817)
chr8 (119-199)||(29028849-29028929)
chr8 (115-199)||(29991511-29991594)
chr8 (115-198)||(39453296-39453379)
chr8 (115-201)||(5277590-5277676)
chr8 (115-200)||(7375666-7375750)
chr8 (115-199)||(28646771-28646856)
chr8 (115-199)||(28651355-28651440)
chr8 (118-195)||(38708186-38708264)
[»] chr7 (5 HSPs)
chr7 (119-197)||(16708263-16708341)
chr7 (119-197)||(17682499-17682577)
chr7 (115-196)||(21559897-21559978)
chr7 (119-195)||(46812797-46812873)
chr7 (115-196)||(11564992-11565072)
[»] chr6 (4 HSPs)
chr6 (119-199)||(8747272-8747352)
chr6 (115-198)||(28944868-28944951)
chr6 (115-201)||(33421859-33421944)
chr6 (114-200)||(3832561-3832647)
[»] scaffold0035 (1 HSPs)
scaffold0035 (123-199)||(71935-72011)
[»] chr1 (6 HSPs)
chr1 (115-199)||(44789032-44789115)
chr1 (115-203)||(46911392-46911479)
chr1 (119-199)||(33053968-33054056)
chr1 (150-199)||(47820402-47820451)
chr1 (115-192)||(30658744-30658820)
chr1 (150-199)||(37588564-37588613)
[»] scaffold0856 (1 HSPs)
scaffold0856 (124-200)||(1918-1994)
[»] scaffold0095 (1 HSPs)
scaffold0095 (115-196)||(16361-16442)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 4e-85; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 115 - 349
Target Start/End: Original strand, 2841933 - 2842167
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctcattttaataagtggt 214  Q
    |||||||||||||||||||||||||||| |||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2841933 tttcgtgcaaatatctattctttctttataaattatggttgttcccataagttgtcaattaaaggatgttcaaataacactcctcattttaataagtgat 2842032  T
Q  215 ttgtacaaagttttagattttcgtgtgttttcttcgtggtttcgtcgtctaagtgcaaatgtgttgttttgttcttcgtcttgatgagtggnnnnnnnnn 314  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||             
T  2842033 ttgtacaaagttttagattttcttgtgttttcttcgtggtttcgtcgtctaagtgcaaatgtgttgttttgttcatcgtcttggtgagcggttatttaat 2842132  T
Q  315 nnnncatcttattggtatgttcgttcgatccatac 349  Q
        |||||||||||||||||||||||||||||||    
T  2842133 ttttcatcttattggtatgttcgttcgatccatac 2842167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 18723693 - 18723777
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctc 199  Q
    ||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18723693 tttcgtgcaaatacctattctttctttacaaattatggttgtccccataagttgtcaattaaaggatgttcaaataacactcctc 18723777  T

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Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 2840657 - 2840760
Alignment:
Q  1 tggataggtttaaaggatattcattttcagttaagccatgtttaaaatgatattcaata--------aggtttagagaattaaattaaatatttgttaca 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||| |||    
T  2840657 tggataggtttaaaggatattcattttcagttaagccatgtttaaaatgatattcaatactctatataggtttagagaattaaattaaatatttgtcaca 2840756  T
Q  93 aaaa 96  Q
    ||||    
T  2840757 aaaa 2840760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 12889800 - 12889718
Alignment:
Q  119 gtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctcat 201  Q
    ||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||| ||||||||||||||| |||||    
T  12889800 gtgcaaatatctattctttctttacaaattatgattgtccccataagttgtcaattaaaggttgttcaaataacacttctcat 12889718  T

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Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 36802999 - 36803079
Alignment:
Q  119 gtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctc 199  Q
    ||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||  |||||||||||||||||||    
T  36802999 gtgcaaatacctattctttctttacaaattatggttgtccccataagttgtcaattaaagattgttcaaataacactcctc 36803079  T

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Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 115 - 198
Target Start/End: Original strand, 26206947 - 26207030
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcct 198  Q
    ||||||||||||| ||||||||||||||||||| ||| || || |||||||||||||||||||| |||||||||||||||||||    
T  26206947 tttcgtgcaaatacctattctttctttacaaattatgattgtctccataagttgtcaattaaagaatgttcaaataacactcct 26207030  T

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Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 44711961 - 44711876
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctca 200  Q
    ||||||||||||| |||||||||||||| |||| ||  || ||||||| |||||||||||||||||||||||||||||||||||||    
T  44711961 tttcgtgcaaatacctattctttctttataaattataattgtccccatgagttgtcaattaaaggatgttcaaataacactcctca 44711876  T

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Target: chr2; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 38560790 - 38560863
Alignment:
Q  123 aaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactc 196  Q
    ||||| ||||| ||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||    
T  38560790 aaatacctattttttctttacaaattatggttgtccccataagttgtcaattaaaagatgttcaaataacactc 38560863  T

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Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 115 - 212
Target Start/End: Complemental strand, 39449089 - 39448993
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctcattttaataagtg 212  Q
    |||||||||| || ||||| ||||||| ||| |  ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||  ||||||||    
T  39449089 tttcgtgcaa-tacctattttttctttgcaagttttggttgtccccataagttgtcaattaaaggttgttcaaataacactcctctttaaaataagtg 39448993  T

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Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 4299295 - 4299210
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaagg-atgttcaaataacactcctc 199  Q
    ||||||||||||||||||||||||||| ||||| ||| || |||| ||||||| || || |||||  |||||||||||||||||||    
T  4299295 tttcgtgcaaatatctattctttctttgcaaattatgattgtccctataagttatcgatcaaaggtttgttcaaataacactcctc 4299210  T

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Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 43513545 - 43513594
Alignment:
Q  150 tggttatccccataagttgtcaattaaaggatgttcaaataacactcctc 199  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  43513545 tggttgtccccataagttgtcaattaaaggttgttcaaataacactcctc 43513594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 28244212 - 28244135
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataaca 193  Q
    |||||||||| || ||||| ||||||| ||||| ||  || ||||||||||||||||| |||||| |||||||||||||    
T  28244212 tttcgtgcaa-tacctattttttctttgcaaattataattgtccccataagttgtcaactaaaggttgttcaaataaca 28244135  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 3012820 - 3012735
Alignment:
Q  119 gtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaa-ggatgttcaaataacactcctcatttt 204  Q
    ||||||||| ||| | |||||||| |||| |||||| |||| ||||||||||||  ||| || ||||||||||||||||||| ||||    
T  3012820 gtgcaaatacctactttttctttaaaaattatggttgtccc-ataagttgtcaaccaaatggttgttcaaataacactcctcttttt 3012735  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 195
Target Start/End: Original strand, 44254700 - 44254780
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaa-ggatgttcaaataacact 195  Q
    |||| |||||||| ||| | |||||||  |||| |||||||| |||||||||||||||| ||| || |||||||||||||||    
T  44254700 tttcctgcaaataactactttttctttgtaaattatggttat-cccataagttgtcaatcaaatggttgttcaaataacact 44254780  T

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Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 21617282 - 21617367
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctca 200  Q
    ||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21617282 tttcgtgcaaatacctattctttctttacaaattatggttgtccccataagttgtcaattaaaggatgttcaaataacactcctca 21617367  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 18624192 - 18624110
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcc 197  Q
    ||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  18624192 tttcgtgcaaatacctattctttctttacaaattatgattatccccataagttgtcaattaaaggttgttcaaataacactcc 18624110  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 14527739 - 14527815
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataa 191  Q
    ||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||    
T  14527739 tttcgtgcaaatacctattctttctttacaaattatggttgtccccgtaagttgtcaattaaaggatgttcaaataa 14527815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 49768290 - 49768205
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctca 200  Q
    ||||||||||||| ||||| ||||||||||||| |||||| ||| |||||||||| | |||||| |||||||||||||||||||||    
T  49768290 tttcgtgcaaatacctattatttctttacaaattatggttgtcctcataagttgttacttaaagaatgttcaaataacactcctca 49768205  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 32546326 - 32546244
Alignment:
Q  119 gtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctcat 201  Q
    ||||||||| ||||||||||||||||||| ||| || |||| |||| |||||||||||||| | |||||||||||||||||||    
T  32546326 gtgcaaatacctattctttctttacaaattatgattgtccctataaattgtcaattaaaggtttttcaaataacactcctcat 32546244  T

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Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 51887762 - 51887845
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctc 199  Q
    |||||||||||||  |||||||||||| ||||| |||||| |||  ||||||||||||||||||| |||||||||||||||||||    
T  51887762 tttcgtgcaaatacatattctttctttgcaaattatggttgtcct-ataagttgtcaattaaaggttgttcaaataacactcctc 51887845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 13263369 - 13263281
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctcatttt 204  Q
    |||||||||| |||||||| ||||||| ||||| ||| || |||||||||||| |||| |||||| ||||||||||||||||||| ||||    
T  13263369 tttcgtgcaa-tatctattttttctttgcaaattatgattgtccccataagttatcaactaaaggttgttcaaataacactcctcttttt 13263281  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 45851859 - 45851943
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctca 200  Q
    |||||||||| || ||||| ||||||| |||||  ||||||||| ||||||||| |||||||||  ||||||||||||||||||||    
T  45851859 tttcgtgcaa-tacctattttttctttgcaaattttggttatcctcataagttggcaattaaagattgttcaaataacactcctca 45851943  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 195
Target Start/End: Original strand, 47112023 - 47112103
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacact 195  Q
    |||||| |||||| ||||| ||||||| ||||| |||||| ||||| |||||| | || |||||| |||||||||||||||    
T  47112023 tttcgtacaaatacctattatttctttgcaaattatggttgtccccgtaagttataaactaaaggttgttcaaataacact 47112103  T

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Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 54694085 - 54693999
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctcat 201  Q
    ||||||||||||| ||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  54694085 tttcgtgcaaatacctattctttctttacaaattatggttgtcctcataagttgtcaattaaaggatgttcaaataacactcctcat 54693999  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 42683926 - 42684012
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctcat 201  Q
    ||||||||||||| || |||||||||||||||| |||||| || ||||||||||| |||||||||||||||||||||||||||||||    
T  42683926 tttcgtgcaaatacctgttctttctttacaaattatggttgtctccataagttgttaattaaaggatgttcaaataacactcctcat 42684012  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 3347099 - 3347013
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctcat 201  Q
    ||||||||||||| ||||||||||||||||||| ||| || ||| |||||||||||||||||| ||||||||||||||||| |||||    
T  3347099 tttcgtgcaaatacctattctttctttacaaattatgattgtcctcataagttgtcaattaaaagatgttcaaataacacttctcat 3347013  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 31376737 - 31376654
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctc 199  Q
    |||||||||| || ||||| ||||||| |||||  ||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  31376737 tttcgtgcaa-tacctattttttctttgcaaattttggttgtccccataagttgtcaattaaaggttgttcaaataacactcctc 31376654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 45055081 - 45055156
Alignment:
Q  124 aatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctc 199  Q
    |||| ||||| ||||||| |||||  ||||| ||||| |||||||||||||||||| |||| |||||||| |||||    
T  45055081 aatacctattttttctttgcaaattttggttgtccccgtaagttgtcaattaaaggttgtttaaataacattcctc 45055156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 54274156 - 54274089
Alignment:
Q  123 aaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataa 191  Q
    ||||| |||||||||||||| |  || |||||||| | |||| ||||||||||||| ||||||||||||    
T  54274156 aaatacctattctttctttatattta-tggttatctctataaattgtcaattaaagtatgttcaaataa 54274089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 30640889 - 30640973
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctc 199  Q
    |||||| |||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30640889 tttcgtacaaatacctattctttctttataaattatggttgtccccataagttgtcaattaaaggatgttcaaataacactcctc 30640973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 43196597 - 43196516
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactc 196  Q
    |||||||||||||  |||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||    
T  43196597 tttcgtgcaaatacgtattctttctttacaaattatggttgtccccataagttgtcaattaaaagatgttcaaataacactc 43196516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 18509157 - 18509080
Alignment:
Q  119 gtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactc 196  Q
    ||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||||||  |||| |||||||||||    
T  18509157 gtgcaaatacctattctttctttacaaattatgattgtccccataagttgtcaattaaagattgtttaaataacactc 18509080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 43154159 - 43154240
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactc 196  Q
    |||||||||||||  |||||||||||| ||||| ||||||  ||| |||| |||||||||||| | ||||||||||||||||    
T  43154159 tttcgtgcaaatacttattctttctttgcaaattatggttgcccctataaattgtcaattaaaagttgttcaaataacactc 43154240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 4771600 - 4771668
Alignment:
Q  119 gtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaa 187  Q
    |||||||||  ||||||||||||| |||| |||||| ||| |||||||||||||||||||| |||||||    
T  4771600 gtgcaaatacatattctttctttataaattatggttgtcctcataagttgtcaattaaaggttgttcaa 4771668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 6292220 - 6292303
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctc 199  Q
    |||||| |||||| ||||| ||||||| ||||| |||||| |||   ||| |||||||||||||| |||| ||||||||||||||    
T  6292220 tttcgtacaaatacctattatttctttgcaaattatggttgtcctt-taaattgtcaattaaaggttgtttaaataacactcctc 6292303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 195
Target Start/End: Complemental strand, 25871400 - 25871361
Alignment:
Q  156 tccccataagttgtcaattaaaggatgttcaaataacact 195  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  25871400 tccccaaaagttgtcaattaaaggttgttcaaataacact 25871361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 10659075 - 10658992
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaa-ggatgttcaaataacactcctc 199  Q
    ||||||||||||||||||| |||||||| |||| | |||| | || | ||||||||||| ||| || |||||||||||||||||||    
T  10659075 tttcgtgcaaatatctatt-tttctttataaattacggttgtgccaa-aagttgtcaatcaaatggttgttcaaataacactcctc 10658992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 34718221 - 34718303
Alignment:
Q  122 caaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctcatttt 204  Q
    |||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  34718221 caaatacctattctttctttacaaattatggttgtccccataagttgtcaattaaaggttgttcaaataacactcctcttttt 34718303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 16613737 - 16613817
Alignment:
Q  119 gtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctc 199  Q
    ||||||||| ||||||||||||||||||| ||| || ||||||||| || ||||||||||  |||||||||||||||||||    
T  16613737 gtgcaaatacctattctttctttacaaattatgattgtccccataaattatcaattaaagattgttcaaataacactcctc 16613817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 29028929 - 29028849
Alignment:
Q  119 gtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctc 199  Q
    ||||||||| ||||| ||||||||||||| ||| || | ||||||| |||||||||||||| |||||||||||||||||||    
T  29028929 gtgcaaatacctattttttctttacaaattatgattgttcccataaattgtcaattaaaggttgttcaaataacactcctc 29028849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 29991511 - 29991594
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctc 199  Q
    |||||||||| || ||||| ||||||| |||||  ||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  29991511 tttcgtgcaa-tacctattttttctttgcaaattttggttgtccccataagttgtcaattaaaggttgttcaaataacactcctc 29991594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 39453379 - 39453296
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcct 198  Q
    |||||||||||||  | |||||||||| ||||| |||||| |||| ||||||||||||||||| | ||||||||||||||||||    
T  39453379 tttcgtgcaaatacattttctttctttgcaaattatggttgtccctataagttgtcaattaaaagttgttcaaataacactcct 39453296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 5277676 - 5277590
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctcat 201  Q
    |||||||||||||  |||||||||||| ||||| ||  || |||| ||||||||||||||||||| ||||||||||||| |||||||    
T  5277676 tttcgtgcaaatacatattctttctttgcaaattatcattgtccctataagttgtcaattaaaggttgttcaaataacattcctcat 5277590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 7375750 - 7375666
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctca 200  Q
    |||||||||| || ||||| ||||||| |||||  ||||| ||| ||||| || ||||||||||| ||||||||||||||||||||    
T  7375750 tttcgtgcaa-tacctattttttctttgcaaattttggttgtcctcataaattatcaattaaaggttgttcaaataacactcctca 7375666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 28646771 - 28646856
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaa--ggatgttcaaataacactcctc 199  Q
    |||||| |||||||||| | |||||||| |||| ||||||||| | ||||||||||||| |||  || |||||||||||||||||||    
T  28646771 tttcgtacaaatatctactttttctttataaattatggttatcac-ataagttgtcaatcaaattggttgttcaaataacactcctc 28646856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 28651355 - 28651440
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaa--ggatgttcaaataacactcctc 199  Q
    |||||| |||||||||| | |||||||| |||| ||||||||| | ||||||||||||| |||  || |||||||||||||||||||    
T  28651355 tttcgtacaaatatctactttttctttataaattatggttatcac-ataagttgtcaatcaaattggttgttcaaataacactcctc 28651440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 38708264 - 38708186
Alignment:
Q  118 cgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaa--ggatgttcaaataacact 195  Q
    |||||||||||||||| ||||||| ||||| |||||| | | ||||| |||||||| |||  || |||||||||||||||    
T  38708264 cgtgcaaatatctattttttctttgcaaattatggttgt-cacataaattgtcaatcaaattggttgttcaaataacact 38708186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 16708263 - 16708341
Alignment:
Q  119 gtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcc 197  Q
    ||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||| |||||||||||||||||    
T  16708263 gtgcaaatatctattctttctttacaaattatggttgtccctataagttgtcaattaaaggttgttcaaataacactcc 16708341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 17682499 - 17682577
Alignment:
Q  119 gtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcc 197  Q
    ||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||| |||||||||||||||||    
T  17682499 gtgcaaatatctattctttctttacaaattatggttgtccctataagttgtcaattaaaggttgttcaaataacactcc 17682577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 21559897 - 21559978
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactc 196  Q
    ||||||||||||| ||||| ||||||||||||| || ||| ||| |||||||||||||||||||||||||||||||||||||    
T  21559897 tttcgtgcaaatacctattatttctttacaaattatagttgtcctcataagttgtcaattaaaggatgttcaaataacactc 21559978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 46812873 - 46812797
Alignment:
Q  119 gtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacact 195  Q
    ||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||||||| |||||||||||||||    
T  46812873 gtgcaaatacctattctttctttacaaattatgattgtccccataagttgtcaattaaaggttgttcaaataacact 46812797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 11564992 - 11565072
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactc 196  Q
    |||||||||| || ||||| ||||||| ||||| |||||| ||||||||||||||||| |||||| ||||||||||||||||    
T  11564992 tttcgtgcaa-tacctattttttctttgcaaattatggttgtccccataagttgtcaactaaaggttgttcaaataacactc 11565072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 8747272 - 8747352
Alignment:
Q  119 gtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctc 199  Q
    |||||||||  |||||||||||||||||| || ||||||| |||||||||||||||||||| |||||||||| ||||||||    
T  8747272 gtgcaaatacttattctttctttacaaattatagttatcctcataagttgtcaattaaaggttgttcaaatatcactcctc 8747352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 28944951 - 28944868
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcct 198  Q
    |||||| |||||| ||||| ||||||||||||| |||||||| | ||||| || ||||||||| ||||| ||||||||||||||    
T  28944951 tttcgtacaaatacctattttttctttacaaattatggttattctcataaattttcaattaaaagatgtccaaataacactcct 28944868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 33421859 - 33421944
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctcat 201  Q
    |||||||||| || ||||| ||||||| |||||  | ||| |||| ||||||||||||||||||| |||||||||||||||||||||    
T  33421859 tttcgtgcaa-tacctattttttctttgcaaattttagttgtccctataagttgtcaattaaaggttgttcaaataacactcctcat 33421944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 3832561 - 3832647
Alignment:
Q  114 atttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaa-ggatgttcaaataacactcctca 200  Q
    ||||| |||||||| | | |||||||||  |||| |||||| |||| ||||||||||||| ||| || ||||||||||||||||||||    
T  3832561 atttcatgcaaataacaactctttctttgtaaattatggttgtccc-ataagttgtcaatcaaatggttgttcaaataacactcctca 3832647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 72011 - 71935
Alignment:
Q  123 aaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctc 199  Q
    ||||| ||||| |||||||| |||| ||| || |||||||||||||||||||||||| |||||||||||||||||||    
T  72011 aaatacctattttttctttataaattatgattgtccccataagttgtcaattaaaggttgttcaaataacactcctc 71935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 44789115 - 44789032
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctc 199  Q
    |||||||||| || ||||| ||||||| |||||  ||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  44789115 tttcgtgcaa-tacctattttttctttgcaaattttggttgtccccataagttgtcaattaaaggttgttcaaataacactcctc 44789032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 46911392 - 46911479
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctcattt 203  Q
    |||||||||| || ||||| ||||||| |||||  ||||| | ||| |||||||||||||||||| |||||||||||||||||||||||    
T  46911392 tttcgtgcaa-tacctattttttctttgcaaattttggttgttcccgtaagttgtcaattaaaggttgttcaaataacactcctcattt 46911479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 33054056 - 33053968
Alignment:
Q  119 gtgcaaatatctattctttctttacaaata--------atggttatccccataagttgtcaattaaaggatgttcaaataacactcctc 199  Q
    ||||||||| |||||||||||||||||||         |||||| ||||||||| |||||||||||||| |||||||||||||||||||    
T  33054056 gtgcaaatacctattctttctttacaaattgacaatttatggttgtccccataaattgtcaattaaaggttgttcaaataacactcctc 33053968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 47820451 - 47820402
Alignment:
Q  150 tggttatccccataagttgtcaattaaaggatgttcaaataacactcctc 199  Q
    ||||| ||||||||| |||||||||||||| |||||||||||||||||||    
T  47820451 tggttgtccccataaattgtcaattaaaggttgttcaaataacactcctc 47820402  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 30658820 - 30658744
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataac 192  Q
    |||||||||| || ||||| ||||||| |||||  ||||| ||||| ||| || ||||||||||| ||||||||||||    
T  30658820 tttcgtgcaa-tacctattttttctttgcaaattttggttgtccccgtaaattatcaattaaaggttgttcaaataac 30658744  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 37588613 - 37588564
Alignment:
Q  150 tggttatccccataagttgtcaattaaaggatgttcaaataacactcctc 199  Q
    ||||| ||||||||| || ||||||||| | |||||||||||||||||||    
T  37588613 tggttgtccccataaattatcaattaaaagttgttcaaataacactcctc 37588564  T

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Target: scaffold0856 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 1994 - 1918
Alignment:
Q  124 aatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactcctca 200  Q
    |||| ||||| ||||||||||||| || ||| ||||||||||||||||| |||| | |||| |||||| ||||||||    
T  1994 aatacctattttttctttacaaattatagttgtccccataagttgtcaactaaaagttgtttaaataatactcctca 1918  T

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Target: scaffold0095 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 16361 - 16442
Alignment:
Q  115 tttcgtgcaaatatctattctttctttacaaataatggttatccccataagttgtcaattaaaggatgttcaaataacactc 196  Q
    |||||||||||||  | |||||||||  ||||| |||||  |||| |||||||||||||||||   ||| ||||||||||||    
T  16361 tttcgtgcaaatacattttctttcttcgcaaattatggtggtccctataagttgtcaattaaaatctgtccaaataacactc 16442  T

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