View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_high_27 (Length: 385)
Name: NF6533_high_27
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 26 - 370
Target Start/End: Complemental strand, 41986198 - 41985854
Alignment:
| Q |
26 |
atggaactgctccaggagagatttgaattccattacttgaacttacaagatgaagcttttaaacatgcaatnnnnnnnnnggaaatggaaaataaggcaa |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41986198 |
atggaactgctccaggagagatttgaattccattacttgaacttacaagatgaagcttttaaacatgcaatagaaaaaaaggaaatggaaaataaggcaa |
41986099 |
T |
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| Q |
126 |
tgggaataaaggttgttgctgtcacgtgccatgggaaaaatcctctcgctcttgtcacattgaactgtgcctgccatccgctactgttccattgccgcaa |
225 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41986098 |
tgggaataaaggttgttgctgtcacgtaccatgggaaaaatcctctcgctcttgtcacattgaactgtgcctgccatccgctactgttccattgccgcaa |
41985999 |
T |
|
| Q |
226 |
agagtgttggacgccgatcccttgcatgtcaacgtactttctagacatctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagtt |
325 |
Q |
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| T |
41985998 |
agagtgttggacgccgatcccttgcgtgtcaacgtactttctagacatctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagtt |
41985899 |
T |
|
| Q |
326 |
gcttttggaccggactatagtgtcgagttattggctgaatatgtg |
370 |
Q |
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| T |
41985898 |
gcttttggaccggactatagtgtcgagttattggctgaatatgtg |
41985854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 367
Target Start/End: Complemental strand, 41981317 - 41981086
Alignment:
| Q |
133 |
aaaggttgttgctgtcacgtgccatgggaaaaatcctctcgctcttgtcacattgaactgtgcctgccatccgctactgttccattgccgcaaagagtgt |
232 |
Q |
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| T |
41981317 |
aaaggtagttgctgtcacatgccaaggggaa---cctcttgctctcggcacattgaaccatgatggccatccaatactgtttcgttgtcacgaagagcgt |
41981221 |
T |
|
| Q |
233 |
tggacgccgatcccttgcatgtcaacgtactttctagacatctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagttgcttttg |
332 |
Q |
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| T |
41981220 |
tggacgccgatgccccatatgtcaatgtgttttcaagacatctgtgtatttaaaaagagattttgtgtggtcaataaaggtggtcggacatttgcgattg |
41981121 |
T |
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| Q |
333 |
gaccggactatagtgtcgagttattggctgaatat |
367 |
Q |
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|||| |||||||||||| ||||| ||||||||||| |
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| T |
41981120 |
gaccagactatagtgtccagttagtggctgaatat |
41981086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 39 - 370
Target Start/End: Original strand, 13170240 - 13170577
Alignment:
| Q |
39 |
aggagagatttgaattccattacttgaacttacaagatgaagcttttaaacatgcaatnnnnnnnnnggaaatggaaaataaggcaatgggaataaaggt |
138 |
Q |
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|||| |||||| |||||| |||||||||||||| ||||||||||||| |||||||| | |||||||||||||||||| |||||||||||| |
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| T |
13170240 |
aggatagatttaaattccgttacttgaacttactagatgaagcttttgaacatgcagcagaaaaacagaaaatggaaaataaggcaaggggaataaaggt |
13170339 |
T |
|
| Q |
139 |
tgttgctgtcacgtgccatgggaaaaatcctctcgctcttgtcacattgaactgtgcctg------ccatccgctactgttccattgccgcaaagagtgt |
232 |
Q |
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||||||||||| ||| |||||||||||||||||||||||| ||||||||| || | | |||||| |||||||||||||||||| ||||| || |
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| T |
13170340 |
tgttgctgtcatgtgtcatgggaaaaatcctctcgctcttagcacattgaatggtcacggtcagggccatccactactgttccattgccgcgaagagcgt |
13170439 |
T |
|
| Q |
233 |
tggacgccgatcccttgcatgtcaacgtactttctagacatctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagttgcttttg |
332 |
Q |
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|||||||| ||||| ||||||| |||| ||||| |||| |||||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
13170440 |
tggacgcctatcccctgcatgtaaacgaactttttagatatctgcatgtttaaagatcggttttgtgcagtcaataaaattggtcggacagttgcttttg |
13170539 |
T |
|
| Q |
333 |
gaccggactatagtgtcgagttattggctgaatatgtg |
370 |
Q |
| |
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|||||| | ||||||| ||||||||| ||||||||||| |
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| T |
13170540 |
gaccgggcgatagtgttgagttattgactgaatatgtg |
13170577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 232 - 371
Target Start/End: Complemental strand, 18991562 - 18991423
Alignment:
| Q |
232 |
ttggacgccgatcccttgcatgtcaacgtactttctagacatctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagttgctttt |
331 |
Q |
| |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||| ||||||||||| ||| |
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| T |
18991562 |
ttggacgttgatcccatgcatgtcaacgtactttctagacatctgcgtgtttaaagagcggttttatgcggttaataaaattggtaggacagttgcgttt |
18991463 |
T |
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| Q |
332 |
ggaccggactatagtgtcgagttattggctgaatatgtga |
371 |
Q |
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||| |||||||||||| |||||| ||||||||||||||| |
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| T |
18991462 |
ggattggactatagtgttgagttagtggctgaatatgtga |
18991423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 2926346 - 2926385
Alignment:
| Q |
133 |
aaaggttgttgctgtcacgtgccatgggaaaaatcctctc |
172 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |||||| |
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| T |
2926346 |
aaaggttgttgttgtcacgtgccatgggaaaaaccctctc |
2926385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 7041946 - 7041904
Alignment:
| Q |
131 |
ataaaggttgttgctgtcacgtgccatgggaaaaatcctctcg |
173 |
Q |
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|||||||| |||||||||||||||||||| ||||| ||||||| |
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| T |
7041946 |
ataaaggtcgttgctgtcacgtgccatggaaaaaaacctctcg |
7041904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 9171274 - 9171234
Alignment:
| Q |
133 |
aaaggttgttgctgtcacgtgccatgggaaaaatcctctcg |
173 |
Q |
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|||||| |||||||||||||||||||| ||||| ||||||| |
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| T |
9171274 |
aaaggtcgttgctgtcacgtgccatggaaaaaaacctctcg |
9171234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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