View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6533_high_28 (Length: 384)
Name: NF6533_high_28
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_high_28 |
 | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 23 - 351
Target Start/End: Original strand, 33807887 - 33808213
Alignment:
| Q |
23 |
cacaccacaacataatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagag |
122 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807887 |
cacaccacaacacaatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagag |
33807986 |
T |
|
| Q |
123 |
ttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtccc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33807987 |
ttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggtccc |
33808086 |
T |
|
| Q |
223 |
gtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgcatcattttacgtttccgctaaagtgcctattttgagttcacggag |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33808087 |
gtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtg--tcattttacgtttccgctaaagtgcctattttgagttcacggag |
33808184 |
T |
|
| Q |
323 |
gagggaaattaagcaggcatttcccaaca |
351 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
33808185 |
gagggaaattatgcaggcatttcccaaca |
33808213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 23 - 351
Target Start/End: Original strand, 33811541 - 33811867
Alignment:
| Q |
23 |
cacaccacaacataatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagag |
122 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811541 |
cacaccacaacacaatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagag |
33811640 |
T |
|
| Q |
123 |
ttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtccc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33811641 |
ttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggtccc |
33811740 |
T |
|
| Q |
223 |
gtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgcatcattttacgtttccgctaaagtgcctattttgagttcacggag |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811741 |
gtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtg--tcattttacgtttccgctaaagtgcctattttgagttcacggag |
33811838 |
T |
|
| Q |
323 |
gagggaaattaagcaggcatttcccaaca |
351 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
33811839 |
gagggaaattatgcaggcatttcccaaca |
33811867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 23 - 351
Target Start/End: Original strand, 33816459 - 33816785
Alignment:
| Q |
23 |
cacaccacaacataatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagag |
122 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816459 |
cacaccacaacacaatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagag |
33816558 |
T |
|
| Q |
123 |
ttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtccc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33816559 |
ttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggtccc |
33816658 |
T |
|
| Q |
223 |
gtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgcatcattttacgtttccgctaaagtgcctattttgagttcacggag |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816659 |
gtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtg--tcattttacgtttccgctaaagtgcctattttgagttcacggag |
33816756 |
T |
|
| Q |
323 |
gagggaaattaagcaggcatttcccaaca |
351 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
33816757 |
gagggaaattatgcaggcatttcccaaca |
33816785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 268
Target Start/End: Original strand, 16698504 - 16698601
Alignment:
| Q |
173 |
ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt |
268 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||||||||| | ||||||| | ||||||| || ||||||||||||||| ||||||| |||||||| |
|
|
| T |
16698504 |
ttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccataatttttccctttctcacattgagaaggatttccacactaaaatt |
16698601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 22764002 - 22763905
Alignment:
| Q |
173 |
ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt |
268 |
Q |
| |
|
||||||||||||||| ||||||| | | |||||||||| | ||||||||||||||||| || |||| ||||||||||||||||| ||||||||| |
|
|
| T |
22764002 |
ttgtattcccattatcattatagcataagttttaagaggcccaatggtcccgtggtttttccctttctcatattgagaaggttttccatgctaaaatt |
22763905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 16698618 - 16698670
Alignment:
| Q |
299 |
agtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca |
351 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
16698618 |
agtgcctattctgagttcacggaggatggaaattatgcatatatttcccaaca |
16698670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 52 - 351
Target Start/End: Complemental strand, 31152226 - 31151926
Alignment:
| Q |
52 |
gagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagtta |
151 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||| |
|
|
| T |
31152226 |
gagttgagagaaaaatagagagttcctcgtaagagtgtgagagaaaaatatagtaagccaatttgtgagagttgtatctataaatttagatacgtagtta |
31152127 |
T |
|
| Q |
152 |
ggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggt-ttttccttactcacattgagaag |
250 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| |||||||||||||||||| |
|
|
| T |
31152126 |
ggtccatctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcctacggatcccgtggtttttttcttactcacattgagaag |
31152027 |
T |
|
| Q |
251 |
gttttccacgctaaaattttgttgtgcatcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaac |
350 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
31152026 |
gttttccacattaaaattttgttgtgtgtcattttatgtttccgctaaagtgcctattttgagttcagagaggagggaaattatgcaggcatttcccaac |
31151927 |
T |
|
| Q |
351 |
a |
351 |
Q |
| |
|
| |
|
|
| T |
31151926 |
a |
31151926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 154 - 351
Target Start/End: Original strand, 22981504 - 22981710
Alignment:
| Q |
154 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag |
250 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||| | |||||||||||||||||| || |||||||||||||| |
|
|
| T |
22981504 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag |
22981603 |
T |
|
| Q |
251 |
gttttccacgctaaaattttgt-tgt------gcatcatttt-acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcat |
342 |
Q |
| |
|
|||||||||||||||||| | | ||| || | |||| ||||||||||| ||||||| ||||||||||||||||| ||||||||| |||| ||| |
|
|
| T |
22981604 |
gttttccacgctaaaattctctgtgtcattacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtcat |
22981701 |
T |
|
| Q |
343 |
ttcccaaca |
351 |
Q |
| |
|
||||||||| |
|
|
| T |
22981702 |
ttcccaaca |
22981710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 154 - 351
Target Start/End: Complemental strand, 23806904 - 23806698
Alignment:
| Q |
154 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag |
250 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||| | |||||||||||||||||| || |||||||||||||| |
|
|
| T |
23806904 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag |
23806805 |
T |
|
| Q |
251 |
gttttccacgctaaaattttgt-tgt------gcatcatttt-acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcat |
342 |
Q |
| |
|
|||||||||||||||||| | | ||| || | |||| ||||||||||| ||||||| ||||||||||||||||| ||||||||| |||| ||| |
|
|
| T |
23806804 |
gttttccacgctaaaattctctgtgtcattacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtcat |
23806707 |
T |
|
| Q |
343 |
ttcccaaca |
351 |
Q |
| |
|
||||||||| |
|
|
| T |
23806706 |
ttcccaaca |
23806698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 92 - 275
Target Start/End: Complemental strand, 1111564 - 1111378
Alignment:
| Q |
92 |
gagaaaaatatagtgagccaatttgtgagagttgtatcta--caaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattatta |
189 |
Q |
| |
|
|||||||||||| || ||||||||||||| | |||||| ||||||||||||||||||||||| || | |||||||| ||||||||| |||||||| |
|
|
| T |
1111564 |
gagaaaaatataaggaaccaatttgtgagaaatatatctatacaaattgagatacatagttaggtttacgtaagggtgaaagtttgtattctcattatta |
1111465 |
T |
|
| Q |
190 |
ttatagtgg-agatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgt |
275 |
Q |
| |
|
|||| | | ||||||||||| |||| | ||||| || |||||||||| | ||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
1111464 |
ttattatagtagatttaagagacttatgagtcccatgatttttccttatttacattcagaaggttttctacactaaaattttgttgt |
1111378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 36 - 351
Target Start/End: Original strand, 50603088 - 50603403
Alignment:
| Q |
36 |
aatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgt--gagagttgtatctaca |
133 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
50603088 |
aatcctcactcacacagagttgagagaaaaatagaaagttcctcataagagtg--agagaaaaatatagtgagccaatttgtatgagagttgtatctaca |
50603185 |
T |
|
| Q |
134 |
aattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttcc |
233 |
Q |
| |
|
|||||||||| ||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| | |
|
|
| T |
50603186 |
aattgagatatatagttaggtccatctaaaggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggttccgtggttttttc |
50603285 |
T |
|
| Q |
234 |
ttactcacattgagaaggttttccacgctaaaattttgttgtgcatcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaatta |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
50603286 |
ttactcacattgagaaggttttccacgctaaaattttattgtgtgtcattttacgttttcgctaaagtgtctattttgagttcacggaggagagaaattg |
50603385 |
T |
|
| Q |
334 |
agcaggcatttcccaaca |
351 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
50603386 |
tactggcatttcccaaca |
50603403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 101 - 352
Target Start/End: Complemental strand, 54967477 - 54967209
Alignment:
| Q |
101 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
194 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
54967477 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
54967378 |
T |
|
| Q |
195 |
gtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt-ttgttgtg-ca--------tca |
281 |
Q |
| |
|
||||| ||| ||||||| | |||||||||||||||||| || |||| ||||||||||||||||||||||||||| | ||||| || | | |
|
|
| T |
54967377 |
gtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttccacgctaaaattctctttgtgtcattacgctttta |
54967278 |
T |
|
| Q |
282 |
ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaacat |
352 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
54967277 |
tttcacgtttccgct--agtgcctattttgagttgacggaggagggaaattatgcaggcatttcccaacat |
54967209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 154 - 352
Target Start/End: Complemental strand, 44782733 - 44782523
Alignment:
| Q |
154 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa |
249 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||| | |||||||||||||||| |||| |||| |||||||| |
|
|
| T |
44782733 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtggttttttccctttctcatattgagaa |
44782634 |
T |
|
| Q |
250 |
ggttttccacgctaaaatt-ttgttgtg-cat--------cattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcagg |
339 |
Q |
| |
|
||||||||||||||||||| | ||||| ||| |||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44782633 |
ggttttccacgctaaaattctctttgtgtcattacgtttatatttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcagg |
44782536 |
T |
|
| Q |
340 |
catttcccaacat |
352 |
Q |
| |
|
||||||||||||| |
|
|
| T |
44782535 |
catttcccaacat |
44782523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 101 - 268
Target Start/End: Original strand, 39298736 - 39298908
Alignment:
| Q |
101 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
194 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| | ||| ||||| ||||||| ||||||||| | |||||||||| |||| |||||| |
|
|
| T |
39298736 |
atagtgagccaatttgtgagagt-gtccttacaaattgagagatatattgtagttagatccacctaagggtgaagttgttgtattccctttatcattata |
39298834 |
T |
|
| Q |
195 |
gtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt |
268 |
Q |
| |
|
||||| |||||||||| | |||||||||| ||||||||| |||||||||||||||||| ||| |||||||| |
|
|
| T |
39298835 |
gtggaagtttaagaggcacaagggtcccgtgatttttccttcatcacattgagaaggtttttcacactaaaatt |
39298908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 154 - 270
Target Start/End: Complemental strand, 18556511 - 18556392
Alignment:
| Q |
154 |
tccacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaag |
250 |
Q |
| |
|
||||||| ||||||||| | |||||||| |||| | ||||||||||| ||||||||||| |||||||||||||||| |||| |||| ||||||||| |
|
|
| T |
18556511 |
tccacctaagggtgaagttgttgtattctcattgtcattatagtggaagtttaagaggctcgagggtcccgtggttttttgcctttctcagattgagaag |
18556412 |
T |
|
| Q |
251 |
gttttccacgctaaaatttt |
270 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
18556411 |
gttttccacgctaaaatttt |
18556392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 199
Target Start/End: Complemental strand, 31725448 - 31725346
Alignment:
| Q |
95 |
aaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattata |
194 |
Q |
| |
|
||||||||||| | |||||||||||| |||| |||||||||||||||||| || |||||||||| || |||||||||||||||| ||||||| ||||| |
|
|
| T |
31725448 |
aaaaatatagttaatcaatttgtgagaattgt--ctacaaattgagatacatcgtaaggtccacctaagtgtgaagatttgtattctcattattgttata |
31725351 |
T |
|
| Q |
195 |
gtgga |
199 |
Q |
| |
|
|||| |
|
|
| T |
31725350 |
ttgga |
31725346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 268
Target Start/End: Complemental strand, 54980051 - 54979933
Alignment:
| Q |
154 |
tccacctgagggtgaagat-ttgtattcccattattattatagtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacattgagaa |
249 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| ||| ||||||| | |||||||||||||||||| || |||| |||||||| |
|
|
| T |
54980051 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaa |
54979952 |
T |
|
| Q |
250 |
ggttttccacgctaaaatt |
268 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
54979951 |
ggttttccatgctaaaatt |
54979933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 272
Target Start/End: Original strand, 17645800 - 17645897
Alignment:
| Q |
173 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt |
272 |
Q |
| |
|
||||||| |||||| ||||||||||| ||||||| ||| | | |||||||||||||| || | | ||||||||||||||||||||||||||||||| |
|
|
| T |
17645800 |
ttgtattgtcattatcattatagtggaagtttaagacgctcaagagtcccgtggttttttttt--ttatattgagaaggttttccacgctaaaattttgt |
17645897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 54979910 - 54979854
Alignment:
| Q |
281 |
attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcagg |
339 |
Q |
| |
|
|||| |||||||||||| |||| ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
54979910 |
atttcacgtttccgcta--gtgcttattttgagttgacggaggagggaaattatgcagg |
54979854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 17645928 - 17645981
Alignment:
| Q |
299 |
agtgcctattttgagttcacggaggagggaaattaagcagg-catttcccaaca |
351 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||| | ||| |||||||||||| |
|
|
| T |
17645928 |
agtgtctattttgagttcacggatgagggaaattatggaggtcatttcccaaca |
17645981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 136 - 351
Target Start/End: Complemental strand, 29707069 - 29706854
Alignment:
| Q |
136 |
ttgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttcctt |
235 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| | | |||||||||||||||||||||||||||||| || | |||||||| || |||||| |
|
|
| T |
29707069 |
ttgagatacatagttaggtccacccgagggtgaagattttttattccattattattatagtggagatttaagaggtctatgagtcccgtgattgttcctt |
29706970 |
T |
|
| Q |
236 |
actcacattgagaaggttttccacgctaaaattttgttgtgcatcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaag |
335 |
Q |
| |
|
||||| |||||||||||||||| | |||||||||||||||| ||||||||| ||| |||||||||| |||||| |||||||||| ||| ||||||| | |
|
|
| T |
29706969 |
actcatattgagaaggttttcctcactaaaattttgttgtgtgtcattttacatttttgctaaagtgcatattttaagttcacggatgagagaaattatg |
29706870 |
T |
|
| Q |
336 |
caggcatttcccaaca |
351 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
29706869 |
gaggcattttccaaca |
29706854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 27642132 - 27642225
Alignment:
| Q |
176 |
tattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggttttccacgctaaaatt |
268 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | || |||||| ||||| |||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
27642132 |
tattcccattattattatagtggaagtttaagagacccgaggaccccgtgattttttcctttctcacattgagaaggttttacacgccaaaatt |
27642225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 101 - 333
Target Start/End: Complemental strand, 26752 - 26516
Alignment:
| Q |
101 |
atagtgagccaatttgtgagagttgtatctacaaattgagataca-----tagttaggtccacctgagggtgaag-atttgtattcccattattattata |
194 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | | |||| || ||||||| |||||| || | |||||||| | |||| |||| | |
|
|
| T |
26752 |
atagtgagccaatttgtgagagtgttccttacaaattgagagataaattgtagtgagatccacctaagggtggagtagttgtattctcgttatcattaga |
26653 |
T |
|
| Q |
195 |
gtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgcatcattttacgtttccg |
294 |
Q |
| |
|
||||| |||||||||| | ||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||| | ||||||||||| || |
|
|
| T |
26652 |
gtggaagtttaagaggcccaagggtcccgtagtttttccttactcacattgaaaaggttttccaccctaaaattttgttgtg--ttattttacgttttcg |
26555 |
T |
|
| Q |
295 |
ctaaagtgcctattttgagttcacggaggagggaaatta |
333 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
26554 |
ctaaagtgtctattttgagttcacgaaggagggagatta |
26516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 101 - 352
Target Start/End: Complemental strand, 25857395 - 25857130
Alignment:
| Q |
101 |
atagtgagccaatttgtgagagttgtatctacaaatt--gagatacat---agttaggtccacctgagggtgaagat-ttgtattcccattattattata |
194 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| |||||| || ||| || ||||||| | ||||||| | ||||||||||||||| |||||| |
|
|
| T |
25857395 |
atagtgagccaatttgtgagagtgttccttacaaattaagagatatattgtagtgagatccacctaaaggtgaagttgttgtattcccattatcattata |
25857296 |
T |
|
| Q |
195 |
gtgga-gatttaagaggcttacgggtcccgtggtttttcctta-ctcacattgagaaggttttccacgctaaaattttgt-tgt------gcat-cattt |
284 |
Q |
| |
|
||||| | |||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||| | | ||| || | |||| |
|
|
| T |
25857295 |
gtggaagttttaagaggcccaagggtcccgtggtttttccttttctcacattgagaaggttttccacgctaaaattctctgtgtcattacgcttatattt |
25857196 |
T |
|
| Q |
285 |
tacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaacat |
352 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25857195 |
cacgtttccgct--agtgcctattttaagttcacggaggagggaaattatgcaggcatttcccaacat |
25857130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 154 - 351
Target Start/End: Complemental strand, 4842857 - 4842648
Alignment:
| Q |
154 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa |
249 |
Q |
| |
|
||||||| ||||||||| | ||||||||| ||||| ||||||||||| | |||||||||| | |||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
4842857 |
tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaagggtcctgtggttttttccctttctcacattgagaa |
4842758 |
T |
|
| Q |
250 |
ggttttccacgctaaaattttgtt-gtg-catca--------ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcagg |
339 |
Q |
| |
|
||||||||||||||||||| | || ||| ||| | ||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4842757 |
ggttttccacgctaaaattctctttgtgtcattacacttatatttcacgtttccgcta--gtgcctattttgagttcacggaggagggaaattatgcagg |
4842660 |
T |
|
| Q |
340 |
catttcccaaca |
351 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4842659 |
catttcccaaca |
4842648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 101 - 351
Target Start/End: Complemental strand, 4835840 - 4835575
Alignment:
| Q |
101 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
194 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||| ||||||||||| |||||| |
|
|
| T |
4835840 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgcattcccattatcattata |
4835741 |
T |
|
| Q |
195 |
gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgt-tgtgcat--------cat |
282 |
Q |
| |
|
||||| | |||||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||||||||| | | ||| ||| || |
|
|
| T |
4835740 |
gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccacgctaaaattctctgtgt-cattacgtttatat |
4835642 |
T |
|
| Q |
283 |
tttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca |
351 |
Q |
| |
|
|| |||||||| || ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
4835641 |
ttcacgtttccact--agtgcctattttgagttcatggaggagggaaattatgcaggcatttcccaaca |
4835575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 270
Target Start/End: Complemental strand, 13465165 - 13465046
Alignment:
| Q |
154 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag |
250 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| ||||||||||| | |||||||||| | |||||| ||||||||||| || |||||||||||||| |
|
|
| T |
13465165 |
tccacctgagggtgaacttgttgtattcccattatcattatagtggatgttttaagaggcccaagggtcctgtggtttttccctttctcacattgagaag |
13465066 |
T |
|
| Q |
251 |
gttttccacgctaaaatttt |
270 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13465065 |
gttttccacgctaaaatttt |
13465046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 91 - 260
Target Start/End: Complemental strand, 8252853 - 8252686
Alignment:
| Q |
91 |
agagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagataca----tagttaggtccacctgagggtgaagatttgtattcccatta |
186 |
Q |
| |
|
|||||||||||||||||| |||||| ||| ||||||||||||||||||||||||| || ||| ||||| || | | ||||| ||||||||||| ||| |
|
|
| T |
8252853 |
agagaaaaatatagtgagtcaatttatgatagttgtatctacaaattgagatacataattaattaagtccatctaaagatgaagctttgtattcccgtta |
8252754 |
T |
|
| Q |
187 |
ttattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacg |
260 |
Q |
| |
|
|||||| | || || ||||||| |||||| |||||| | |||||||||| |||||||||||||||||| |
|
|
| T |
8252753 |
ttattacattgaggagttaagagacttacgagtcccg------taccttactcacgttgagaaggttttccacg |
8252686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 27341120 - 27341025
Alignment:
| Q |
173 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt |
268 |
Q |
| |
|
||||||| ||||||| ||| |||| || ||||||||| | |||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
27341120 |
ttgtatttccattatcattgtagtagaagtttaagaggtacaagggtcccgtggtttttcctttcttacattgagaaggttttccacgctaaaatt |
27341025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 268
Target Start/End: Original strand, 17845847 - 17845960
Alignment:
| Q |
156 |
cacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttt |
254 |
Q |
| |
|
||||| ||||||||| | ||||||| ||||||| ||||||||||| ||||||||| | ||||| ||||||||||||| ||||||||| |||||||| |
|
|
| T |
17845847 |
cacctaagggtgaagttgttgtatttccattatcattatagtggaagtttaagaggtccaaaggtcctgtggtttttccttcctcacattgggaaggttt |
17845946 |
T |
|
| Q |
255 |
tccacgctaaaatt |
268 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
17845947 |
tccactctaaaatt |
17845960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 268
Target Start/End: Complemental strand, 24379487 - 24379370
Alignment:
| Q |
154 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag |
250 |
Q |
| |
|
||||||| ||||||||| | ||||||||| ||||| ||||||||||| | |||||||||| | | ||||||||||||||| || |||||||||||||| |
|
|
| T |
24379487 |
tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaaagatcccgtggtttttccctttctcacattgagaag |
24379388 |
T |
|
| Q |
251 |
gttttccacgctaaaatt |
268 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
24379387 |
gttttccacgttaaaatt |
24379370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 301 - 351
Target Start/End: Original strand, 24380113 - 24380163
Alignment:
| Q |
301 |
tgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca |
351 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
24380113 |
tgcctattttgagttcacagaggagggaaattatgcaggcatttcccaaca |
24380163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 268
Target Start/End: Complemental strand, 38994218 - 38994151
Alignment:
| Q |
202 |
tttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt |
268 |
Q |
| |
|
||||||||||| |||||||||||||||||| || ||| |||||||||||||||||||| ||||||| |
|
|
| T |
38994218 |
tttaagaggctcgagggtcccgtggtttttccctttctcgcattgagaaggttttccacgttaaaatt |
38994151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 351
Target Start/End: Complemental strand, 24379347 - 24379279
Alignment:
| Q |
281 |
attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca |
351 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |||||||||||||| ||||||| | || ||||| |||||| |
|
|
| T |
24379347 |
attttacgtttccacta--gtgcctattttaagttcacggaggagagaaattatgtagacattttccaaca |
24379279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 101 - 351
Target Start/End: Original strand, 41481548 - 41481815
Alignment:
| Q |
101 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
194 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
41481548 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
41481647 |
T |
|
| Q |
195 |
gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaatt-ttgttgtg-cat--------ca |
281 |
Q |
| |
|
||||| | |||||||||| | |||||||||||||||| |||| |||| ||||||||||||||||||||||||||| | ||||| ||| | |
|
|
| T |
41481648 |
gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcatattgagaaggttttccacgctaaaattctctttgtgtcattacgtttata |
41481747 |
T |
|
| Q |
282 |
ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca |
351 |
Q |
| |
|
||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41481748 |
tttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
41481815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 101 - 352
Target Start/End: Original strand, 36167547 - 36167814
Alignment:
| Q |
101 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
194 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
36167547 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
36167646 |
T |
|
| Q |
195 |
gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgtt-gtg-catca-------- |
281 |
Q |
| |
|
||||| | |||||||||| | |||||| ||||||||| |||| |||| ||||||||||||||||||||||||||| | || ||| ||| | |
|
|
| T |
36167647 |
gtggaagttttaagaggcccaagggtcc-gtggttttttccctttctcatattgagaaggttttccacgctaaaattctctttgtgtcattacgtttata |
36167745 |
T |
|
| Q |
282 |
ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaacat |
352 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36167746 |
tttcacgtttccgcta--gtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaacat |
36167814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 346
Target Start/End: Complemental strand, 18951326 - 18951129
Alignment:
| Q |
157 |
acctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggt |
252 |
Q |
| |
|
|||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||| || | |||| |||||||||| |||| |||||||||||||||| |
|
|
| T |
18951326 |
acctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaagcccaaaggtctcgtggttttttccctttctcacattgagaaggt |
18951227 |
T |
|
| Q |
253 |
tttccacgctaaaattttg-----ttgtgcat-cattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcc |
346 |
Q |
| |
|
|||||| ||||||||| || || || | |||| | ||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
18951226 |
tttccatgctaaaattctgtgtcattacgcttatatttcatgtttccgct--agtgcctattttgagttcacggaggaggcaaattatgcaggcatttcc |
18951129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 154 - 352
Target Start/End: Original strand, 2727 - 2937
Alignment:
| Q |
154 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa |
249 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||| | |||||||||||||||| |||| ||||||||||||| |
|
|
| T |
2727 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaa |
2826 |
T |
|
| Q |
250 |
ggttttccacgctaaaatt-ttgttgtg-cat--------cattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcagg |
339 |
Q |
| |
|
||||||||||||||||||| | ||||| ||| |||| ||||||||||| |||| ||||||||||||||||||| |||||||||| ||| | |
|
|
| T |
2827 |
ggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgct--agtgtctattttgagttcacggagaagggaaattatgcatg |
2924 |
T |
|
| Q |
340 |
catttcccaacat |
352 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2925 |
catttcccaacat |
2937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 101 - 351
Target Start/End: Complemental strand, 9757480 - 9757212
Alignment:
| Q |
101 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
194 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
9757480 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
9757381 |
T |
|
| Q |
195 |
gtgga---gatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggttttccacgctaaaatt-ttgttgtg-cat--------c |
280 |
Q |
| |
|
||||| |||||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||||||||| | ||||| ||| |
|
|
| T |
9757380 |
gtggaagttttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttat |
9757281 |
T |
|
| Q |
281 |
attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca |
351 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| |||||| |
|
|
| T |
9757280 |
atttcacgtttccgct--agtgcctattttgagttcacggaggaaggaaattatgcaggcatttaccaaca |
9757212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 173 - 270
Target Start/End: Complemental strand, 37287069 - 37286972
Alignment:
| Q |
173 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatttt |
270 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
37287069 |
ttgtattcttattattattatagtggaagtttaagatgcttaagggtcccgtgatttttcctttttcacattgagaaggttttccatgctaaaatttt |
37286972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 156 - 268
Target Start/End: Complemental strand, 42683038 - 42682924
Alignment:
| Q |
156 |
cacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggtt |
253 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||| | |||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
42683038 |
cacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtgatttttcctttctcacattgagaaggtt |
42682939 |
T |
|
| Q |
254 |
ttccacgctaaaatt |
268 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
42682938 |
ttccacgctgaaatt |
42682924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 173 - 351
Target Start/End: Complemental strand, 342404 - 342217
Alignment:
| Q |
173 |
ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttt-ttcc-ttactcacattgagaaggttttccacgctaaaattt |
269 |
Q |
| |
|
||||||||||||||| ||||||||||| | |||||||||| | || ||||||||||| |||| || |||| |||||||||||||| |||||||||||| |
|
|
| T |
342404 |
ttgtattcccattatcattatagtggaagttttaagaggcccaaggatcccgtggtttcttccatttctcatattgagaaggtttttcacgctaaaattc |
342305 |
T |
|
| Q |
270 |
tgttgtg-catca--------ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca |
351 |
Q |
| |
|
| ||||| ||| | ||| ||||||| |||| ||||||||||||||||||||||||||| |||||| |||||||||| |||||| |
|
|
| T |
342304 |
t-ttgtgtcattacgcttatatttcacgtttctgcta--gtgcctattttgagttcacggaggaggaaaattatgcaggcattttccaaca |
342217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 173 - 266
Target Start/End: Original strand, 37037942 - 37038035
Alignment:
| Q |
173 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaa |
266 |
Q |
| |
|
|||||||| |||||| |||||||| | |||||||||| | |||||||||||||| ||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
37037942 |
ttgtattctcattatcgttatagtgaaagtttaagaggcccaagggtcccgtggtttctcctttctcacattgagaaggttttcctcgctaaaa |
37038035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 37038074 - 37038108
Alignment:
| Q |
299 |
agtgcctattttgagttcacggaggagggaaatta |
333 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37038074 |
agtgcctattttgagttcacggaggagagaaatta |
37038108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University