View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_high_30 (Length: 360)
Name: NF6533_high_30
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 346
Target Start/End: Complemental strand, 49518608 - 49518273
Alignment:
| Q |
11 |
atgaataaatttgagtactctaaagtgaatattaaacacactcatgatttgttatacatgtgttaacaagataaaccattgatgttttcatcaatggtgg |
110 |
Q |
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| T |
49518608 |
atgaacaaatttgagtactctaaagtgaatattaaatacactcatgatttattatacatgtgctaacaagataaaccattgatgttttcatcaatggtgg |
49518509 |
T |
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| Q |
111 |
gtggatattaagtgagttgcttgctgtagaaaatccgaaccgaataggagttaagcgataaaaagtaaaaacatggtaactgacaaattataattagtaa |
210 |
Q |
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| T |
49518508 |
gtggatattaagtgagttgcttgctgtagaaaatccgaaccgaataggagttaagcgataaaaagtaaaaacatggtaactgacaaattataattagtaa |
49518409 |
T |
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| Q |
211 |
tcaattaaagtttggttggcagctgtttgtaataactttaatagtagcaactatacactgtttatagaacacagaaaataccttttaaattgtggatcgg |
310 |
Q |
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| T |
49518408 |
tcaattaaagtttggttggcagctgtttgtaataactttaatagtagcaactatacactgtttataaaacacagaaaataccttttatattgtggatcgg |
49518309 |
T |
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| Q |
311 |
tgggatcaatagcatagtcaggagagaaaagaagtg |
346 |
Q |
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| T |
49518308 |
tgggatcaatagcatagtcaggagagaaaagaagtg |
49518273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 225 - 335
Target Start/End: Complemental strand, 27747765 - 27747655
Alignment:
| Q |
225 |
gttggcagctgtttgtaataactttaatagtagcaactatacactgtttatagaacacagaaaataccttttaaattgtggatcggtgggatcaatagca |
324 |
Q |
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| T |
27747765 |
gttggcagctgcttgtaatagcttaaatagaagcaacaatacaatgtttatagaacacaaaaaataccttttaaattgtggatcggtgggatcaatagca |
27747666 |
T |
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| Q |
325 |
tagtcaggaga |
335 |
Q |
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| T |
27747665 |
tagtcaggaga |
27747655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 27747924 - 27747864
Alignment:
| Q |
46 |
acacactcatgatttgttatacatgtgttaacaagataaaccattgatgttttcatcaatg |
106 |
Q |
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| T |
27747924 |
acacacacatgatttgttatacatgtgcatacaagataaaccattgatgttttcatcaatg |
27747864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 38527224 - 38527270
Alignment:
| Q |
285 |
aaaataccttttaaattgtggatcggtgggatcaatagcatagtcag |
331 |
Q |
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| T |
38527224 |
aaaataccttttaaattgtggatcggtgggatcaatagcaaagtcag |
38527270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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