View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6533_high_36 (Length: 346)

Name: NF6533_high_36
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6533_high_36
NF6533_high_36
[»] chr4 (9 HSPs)
chr4 (1-338)||(37241904-37242229)
chr4 (61-248)||(37245017-37245198)
chr4 (155-248)||(37232850-37232943)
chr4 (155-248)||(37253099-37253192)
chr4 (75-131)||(37232772-37232828)
chr4 (283-319)||(37241890-37241926)
chr4 (263-319)||(37245129-37245185)
chr4 (77-134)||(37237696-37237753)
chr4 (9-65)||(37232817-37232873)
[»] scaffold0902 (3 HSPs)
scaffold0902 (61-319)||(3298-3550)
scaffold0902 (75-131)||(3297-3353)
scaffold0902 (65-130)||(3574-3639)
[»] scaffold1652 (4 HSPs)
scaffold1652 (74-319)||(338-571)
scaffold1652 (65-140)||(170-245)
scaffold1652 (91-145)||(277-331)
scaffold1652 (260-318)||(335-393)
[»] scaffold1176 (3 HSPs)
scaffold1176 (67-319)||(112-352)
scaffold1176 (199-315)||(1355-1468)
scaffold1176 (258-320)||(114-176)
[»] chr6 (6 HSPs)
chr6 (77-234)||(14351555-14351712)
chr6 (199-319)||(14248242-14248359)
chr6 (172-319)||(14254049-14254190)
chr6 (90-319)||(14316777-14316994)
chr6 (67-146)||(14248376-14248455)
chr6 (79-131)||(14248241-14248293)
[»] scaffold1801 (2 HSPs)
scaffold1801 (199-319)||(122-239)
scaffold1801 (78-131)||(187-240)
[»] scaffold0002 (1 HSPs)
scaffold0002 (67-146)||(165271-165350)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 37242229 - 37241904
Alignment:
Q  1 tcgcagttaactatccaacatctcctcctcctgcttcctttggttctcccgctttcgctcctgcttctcctgttgccgctcctgcagttactccatcgtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||| |||    
T  37242229 tcgcagttaactatccaacatctcctcctcctgcttcctttggttctcc------------tgcttctcctgttgccgctcctgcagttactccattgtc 37242142  T
Q  101 gatctcaactcctccatctcaagcaccatcacctgcgattgctccctccaccagcgctaactcaccggcagcatcttctcccgtacctataacgagtggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||  ||    
T  37242141 gatctcaactcctccatctcaagcaccatcacctgcgattgctccctccaccagcgctaactcaccggtggcatcttctcccgtacctgtaacgagcagt 37242042  T
Q  201 ccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctgctattactacatcgtcaatctctactc 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37242041 ccttctccttcaccgtccgccatcaactctccaccatctcctcctcctcacgcctcccctgctgccgctcctgctattactccatcgtcaatctctactc 37241942  T
Q  301 ctccaactaaagcaccatcgtcgatctctgctcctcca 338  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  37241941 ctccaactaaagcaccatcgtcgatctctactcctcca 37241904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 61 - 248
Target Start/End: Complemental strand, 37245198 - 37245017
Alignment:
Q  61 ctgcttctcctgttgccgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatcacctgcgattgctccctccaccagcgctaa 160  Q
    |||||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||      ||||||    
T  37245198 ctgcttctcccgttgccgctcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccatcaccagcgatttctccctc------cgctaa 37245105  T
Q  161 ctcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcct 248  Q
    |||| |||| |||||| ||||||| |||   | |||   ||||||||| ||||||||| ||| ||||||||||||||| |||||||||    
T  37245104 ctcaacggcggcatctgctcccgtgcctgcgaagagcattccttctccatcaccgtccaccaacaactctccaccatctcctcctcct 37245017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 37232943 - 37232850
Alignment:
Q  155 cgctaactcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcct 248  Q
    |||| |||||||||| |||||| |||||| |||| | | || |  ||| |||||||| || ||||||||||||||||||||||| |||||||||    
T  37232943 cgctcactcaccggctgcatctcctcccgcacctgtgaagaattctccatctccttcgccatccgccatcaactctccaccatctcctcctcct 37232850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 37253192 - 37253099
Alignment:
Q  155 cgctaactcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcct 248  Q
    |||| |||||||||| |||||| ||||| ||||| | | ||  | ||| ||||||||||| || |||||||||||||||||||| |||||||||    
T  37253192 cgctgactcaccggcggcatctgctcccatacctgtgaagaacgctccatctccttcaccttcagccatcaactctccaccatctcctcctcct 37253099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 37232828 - 37232772
Alignment:
Q  75 gccgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatca 131  Q
    ||||||||||| ||||||||||| |||||||| ||||||||  || |||||||||||    
T  37232828 gccgctcctgctgttactccatcatcgatctccactcctcctgctgaagcaccatca 37232772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 37241926 - 37241890
Alignment:
Q  283 catcgtcaatctctactcctccaactaaagcaccatc 319  Q
    ||||||| |||||||||||||||||||||||||||||    
T  37241926 catcgtcgatctctactcctccaactaaagcaccatc 37241890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 37245185 - 37245129
Alignment:
Q  263 tgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccatc 319  Q
    ||||||||||||| | ||| ||||||| ||||||||||||||| || ||||||||||    
T  37245185 tgccgctcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccatc 37245129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 37237753 - 37237696
Alignment:
Q  77 cgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatcacct 134  Q
    ||||||||| ||||||||||| || ||||| |||||||| ||| ||||||| ||||||    
T  37237753 cgctcctgctgttactccatcatccatctctactcctccttctgaagcaccttcacct 37237696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 37232873 - 37232817
Alignment:
Q  9 aactatccaacatctcctcctcctgcttcctttggttctcccgctttcgctcctgct 65  Q
    |||| |||| ||||||||||||||||||||| |||||| |||||   ||||||||||    
T  37232873 aactctccaccatctcctcctcctgcttcctctggttcacccgccgccgctcctgct 37232817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 61 - 319
Target Start/End: Complemental strand, 3550 - 3298
Alignment:
Q  61 ctgcttctcctgttgccgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatcacctgcgattgctccctccaccagcgctaa 160  Q
    ||||| ||| || |||| ||||||| || ||||||||||||||||| ||||||||||||||||||||| | ||||||||| ||||||||      |||||    
T  3550 ctgctcctcttgctgccactcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccaacgcctgcgatttctccctcc------gctaa 3457  T
Q  161 ctcaccggcagc---atcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcc 257  Q
    ||||  |||| |   |||| ||||||||||| | | |||  ||||||||||||||||||| |||||||||||||||||||   |||||||||| || |||    
T  3456 ctcaatggcatctatatctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctccaccat---ctcctcctcatgcttcc 3360  T
Q  258 cctgctgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccatc 319  Q
    || || ||||||||||| |||||| ||||| | |||||||| |||||| |||||||||||||    
T  3359 ccagcagccgctcctgccattactccatcggcgatctctacccctccatctaaagcaccatc 3298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 3353 - 3297
Alignment:
Q  75 gccgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatca 131  Q
    |||||||||||  ||||||||||| ||||||| || ||||||||| |||||||||||    
T  3353 gccgctcctgccattactccatcggcgatctctacccctccatctaaagcaccatca 3297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 3639 - 3574
Alignment:
Q  65 ttctcctgttgccgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatc 130  Q
    |||||| | ||| |||||||| || ||||||||||||||||| |  |||||| |||||||||||||    
T  3639 ttctcccgctgctgctcctgctgtcactccatcgtcgatctctatccctccaactcaagcaccatc 3574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 74 - 319
Target Start/End: Original strand, 338 - 571
Alignment:
Q  74 tgccgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatcacctgcgattgctccctccaccagcgctaactcaccggcagca 173  Q
    |||||||||||| || |||||||||||||| || ||||||||||||||||||||||  ||||||||| |||||||      |||||||||| |||  |||    
T  338 tgccgctcctgctgtgactccatcgtcgatatctactcctccatctcaagcaccatagcctgcgatttctccctc------cgctaactcaacggtggca 431  T
Q  174 tcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctg 273  Q
    ||| ||||||||||| | | |||  ||||||||||||||||||| |||||||||||||||||||      ||||||| || ||||| || ||| ||||||    
T  432 tctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctccaccat------ctcctcaagcttcccccgcagccactcctg 525  T
Q  274 ctattactacatcgtcaatctctactcctccaactaaagcaccatc 319  Q
    |||||||| ||||| | |||||||| || ||| |||||||||||||    
T  526 ctattactccatcggcgatctctaccccaccatctaaagcaccatc 571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 170 - 245
Alignment:
Q  65 ttctcctgttgccgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatcacctgcgatt 140  Q
    |||||| | ||| |||||||| ||  |||||||||||||||| |||||||||||||||| |||||| ||| |||||    
T  170 ttctcccgctgctgctcctgctgtctctccatcgtcgatctctactcctccatctcaagtaccatcgcctacgatt 245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 277 - 331
Alignment:
Q  91 ctccatcgtcgatctcaactcctccatctcaagcaccatcacctgcgattgctcc 145  Q
    |||||||||||||||| || |||||||||||||||||||| ||| ||||| ||||    
T  277 ctccatcgtcgatctctacccctccatctcaagcaccatcgcctacgatttctcc 331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 335 - 393
Alignment:
Q  260 tgctgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccat 318  Q
    |||||||||||||||| | ||| ||||||| || |||||||||||| || |||||||||    
T  335 tgctgccgctcctgctgtgactccatcgtcgatatctactcctccatctcaagcaccat 393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 67 - 319
Target Start/End: Original strand, 112 - 352
Alignment:
Q  67 ctcctgttgccgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatcacctgcgattgctccctccaccagcgctaactcacc 166  Q
    |||||| ||| |||||||| || |||||||| |||||||| ||||||||||||||||||||||| ||||||||| |||||||       ||||||||| |    
T  112 ctcctgctgctgctcctgctgtgactccatcatcgatctctactcctccatctcaagcaccatcgcctgcgatttctccctc------agctaactcaac 205  T
Q  167 ggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgcc 266  Q
     || || ||| |||| | |||| | | |||  |||||||||||||||| || ||||||||||||  |||||      ||||||| || ||||| || |||    
T  206 cgcggcgtctgctcctgaacctgtgaagagcagtccttctccttcaccatctgccatcaactctagaccat------ctcctcaagcttcccccgcagcc 299  T
Q  267 gctcctgctattactacatcgtcaatctctactcctccaactaaagcaccatc 319  Q
     | |||||||||||| ||||||| |||||||| |||||| |||||||||||||    
T  300 acccctgctattactccatcgtccatctctacccctccatctaaagcaccatc 352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 315
Target Start/End: Original strand, 1355 - 1468
Alignment:
Q  199 gtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctgctattactacatcgtcaatctcta- 297  Q
    ||||||||||||||||||  |||||||||| ||||||||   |||||||||| || ||||| ||  | ||||| |||| |||| |||||||||||||||     
T  1355 gtccttctccttcaccgtgtgccatcaactgtccaccat---ctcctcctcatgcttcccccgcaacagctccggctaatact-catcgtcaatctctac 1450  T
Q  298 ctcctccaactaaagcac 315  Q
    | |||||| |||||||||    
T  1451 cccctccatctaaagcac 1468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 114 - 176
Alignment:
Q  258 cctgctgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccatcg 320  Q
    |||||||| ||||||||| | ||| |||| || ||||||||||||||| || |||||||||||    
T  114 cctgctgctgctcctgctgtgactccatcatcgatctctactcctccatctcaagcaccatcg 176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 77 - 234
Target Start/End: Complemental strand, 14351712 - 14351555
Alignment:
Q  77 cgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatcacctgcgattgctccctccaccagcgctaactcaccggcagcatct 176  Q
    ||||||||| ||||||||||| ||  |||| ||||| ||||||||||||||||| ||| ||||| ||| ||| ||| |||||||||||||||    ||||    
T  14351712 cgctcctgctgttactccatcatcagtctctactccaccatctcaagcaccatcgcctacgatttctctctcaaccggcgctaactcaccggtgatatct 14351613  T
Q  177 tctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccac 234  Q
    |||||| ||||| ||| |||| |||||||||||||| | ||| |||||||||||||||    
T  14351612 tctcccatacctgtaaagagtagtccttctccttcatcatccaccatcaactctccac 14351555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 199 - 319
Target Start/End: Complemental strand, 14248359 - 14248242
Alignment:
Q  199 gtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctgctattactacatcgtcaatctctac 298  Q
    ||||||||||||||||||| ||||||||||||||| |||   |||||||||| || | ||| || ||| ||||||| |||||| ||||| | ||||||||    
T  14248359 gtccttctccttcaccgtctgccatcaactctccatcat---ctcctcctcaagctttccccgcagccactcctgcaattactccatcggcgatctctac 14248263  T
Q  299 tcctccaactaaagcaccatc 319  Q
     |||||| |||||||||||||    
T  14248262 ccctccatctaaagcaccatc 14248242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 172 - 319
Target Start/End: Complemental strand, 14254190 - 14254049
Alignment:
Q  172 catcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcc 271  Q
    ||||| ||||||||||| | | |||  ||||||||||||||||||| |||||||||||||||||||      ||||||| || || ||||| ||  ||||    
T  14254190 catctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctccaccat------ctcctcaagcttcacctgcagctactcc 14254097  T
Q  272 tgctattactacatcgtcaatctctactcctccaactaaagcaccatc 319  Q
    |||||||||| ||||||| |||||||  |||||| |||||| ||||||    
T  14254096 tgctattactccatcgtcgatctctatccctccatctaaagtaccatc 14254049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 319
Target Start/End: Complemental strand, 14316994 - 14316777
Alignment:
Q  90 actccatcgtcgatctcaactcctccatctcaagcaccatcacctgcgattgctccctccaccagcgctaactcaccggcagcatcttctcccgtaccta 189  Q
    |||||||| |||||||| |||||||| ||||||||||| || |||||||||  ||||  || ||||  ||||||| |   ||||||| |||||||||||     
T  14316994 actccatcatcgatctctactcctccgtctcaagcaccctcgcctgcgatt--tccc--catcagc--taactcaac---agcatctgctcccgtacctg 14316904  T
Q  190 taacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctgctattactacatcgtc 289  Q
    | | |||  ||||||||  ||||||||| ||||||||||||||| |||   |||||||||| || ||||| || ||| |||| || || ||| |||| ||    
T  14316903 tgaagagcagtccttctatttcaccgtctgccatcaactctccatcat---ctcctcctcaagcttcccccgcagccactccggccatcactccatcatc 14316807  T
Q  290 aatctctactcctccaactaaagcaccatc 319  Q
     |||||||| |||||  |||||||||||||    
T  14316806 gatctctacccctccttctaaagcaccatc 14316777  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 14248455 - 14248376
Alignment:
Q  67 ctcctgttgccgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatcacctgcgattgctccc 146  Q
    |||||| ||| |||||||| || ||||||| ||||||||| |||||||||||||||| |||||| ||||||||| |||||    
T  14248455 ctcctgctgctgctcctgctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttctccc 14248376  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 14248293 - 14248241
Alignment:
Q  79 ctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatca 131  Q
    |||||||| ||||||||||| ||||||| || ||||||||| |||||||||||    
T  14248293 ctcctgcaattactccatcggcgatctctacccctccatctaaagcaccatca 14248241  T

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Target: scaffold1801 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 199 - 319
Target Start/End: Original strand, 122 - 239
Alignment:
Q  199 gtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctgctattactacatcgtcaatctctac 298  Q
    ||||||||||||||||||| |||||||||||||||| ||   |||||||||| || || || || || |||||||| |||||| ||||||| ||||||||    
T  122 gtccttctccttcaccgtctgccatcaactctccacaat---ctcctcctcatgcttcgccagcagctgctcctgccattactccatcgtcgatctctac 218  T
Q  299 tcctccaactaaagcaccatc 319  Q
     |||||| |||||||| ||||    
T  219 ccctccatctaaagcatcatc 239  T

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Target: scaffold1801; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 187 - 240
Alignment:
Q  78 gctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatca 131  Q
    ||||||||  ||||||||||||||||||| || ||||||||| ||||| |||||    
T  187 gctcctgccattactccatcgtcgatctctacccctccatctaaagcatcatca 240  T

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Target: scaffold0002 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 165271 - 165350
Alignment:
Q  67 ctcctgttgccgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatcacctgcgattgctccc 146  Q
    |||||| ||| |||||||| || ||||||| ||||||||| |||||||||||||||| |||||| ||||||||| |||||    
T  165271 ctcctgctgctgctcctgctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttctccc 165350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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