View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_high_39 (Length: 341)
Name: NF6533_high_39
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_high_39 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 152 - 319
Target Start/End: Original strand, 521700 - 521867
Alignment:
| Q |
152 |
tcacaattctatgtggttgcaaaaagtttatctctaatttattttatttgcttacgcaaatttatctctaatttgtttgaaaaagtgtcgtagtaaatac |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
521700 |
tcacaattctatgtggttgcaaaaagtttatctctaatttattttatttgcttacgcaaatttatctctaatttgtttgaaaaagtgtcgtagtaaatac |
521799 |
T |
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| Q |
252 |
tcaaatttgggcttcagttctttctaaaaataattaaaagaaaatatgatcctattcgattctagaca |
319 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
521800 |
tcaaatttgggcttcagttctttctataaataattaaaagaaaatatgatcctattcgattctagaca |
521867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 521474 - 521577
Alignment:
| Q |
20 |
caatatggggtgctctgttgcggatggtctaaatatctttactcataaatcatctccctatgtcatgatgaccacgtgggatgatatatgtataaagata |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
521474 |
caatatggggtgctctgttgcggatggtctaaatatctttactcataaatcatctccctatatcatgatgaccacatgggatgatatatgtataaagata |
521573 |
T |
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| Q |
120 |
ttta |
123 |
Q |
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|||| |
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| T |
521574 |
ttta |
521577 |
T |
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