View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_high_41 (Length: 333)
Name: NF6533_high_41
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 31179469 - 31179772
Alignment:
| Q |
18 |
atttaaagaccaaagaaaatcctaataatgtttctttcttagtgaaaaggaagtagtccaccttaaagttataacatactcccctattgtatataaatca |
117 |
Q |
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| T |
31179469 |
atttaaagaccaaagaaaatcctaataatgtttctttcttagtgaaaaggaagtagtccaccttaaagttataacatattcccctattgtatataaatca |
31179568 |
T |
|
| Q |
118 |
taatagtttctaagaatagttctcaaggcgagaaatttaagaaaatcaaacacataggaatcttagaaaagtgtaaatattatatagaaccttcttctca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
31179569 |
taatagtttctaagaatagttctcaaggcgagaaatttaagaaaatcaaacacataggaatcttagaaaagagtaaatgttatatagaaccttcttctca |
31179668 |
T |
|
| Q |
218 |
tgttcatcgttagagtgattgacactctgtgaaatgattgatgctttcttaaggttctgatagtcaacgggagctttatgtcgccgccaataggactgca |
317 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31179669 |
tgttcattgatagagtgattgacactctgtgaaatgattgatgctttcttaaggttctgatagtcaacgggagctttatgtcgccgccaataggactgca |
31179768 |
T |
|
| Q |
318 |
tatt |
321 |
Q |
| |
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|||| |
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| T |
31179769 |
tatt |
31179772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 31002052 - 31002347
Alignment:
| Q |
18 |
atttaaagaccaaagaaaatcctaataatgtttctttcttagtgaaaaggaagtagtccaccttaaagttataacatactcccctattgtatataaatca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| |
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| T |
31002052 |
atttaaagaccaaagaaaatcctaataatgtttctttcttagtgaaaaggaagtagtccaccttaaagttctaacatattcccctattttatataaatca |
31002151 |
T |
|
| Q |
118 |
taatagtttctaagaatagttctcaaggcgagaaatttaagaaaatcaaacacataggaatcttagaaaagtgtaaatattatatagaaccttcttctca |
217 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||| |||||||| | ||||| ||||||||||||||||||||||| ||| |
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| T |
31002152 |
taata-------------gttctcaaggcgagaaatttaagaaaagcaaacacagaggaatctaacaaaagagtaaatattatatagaaccttctgctct |
31002238 |
T |
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| Q |
218 |
tgttcatcgttagagtgattgacactctgtgaaatgattgatgctttcttaaggttctgatagtcaacgggagctttatgtcgccgccaataggactgca |
317 |
Q |
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|||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
31002239 |
tgttcatcattggagtgattgacactttgtgaaatgattgatgctttcttaaggttctgatagtccacgagagctttatgtcgccgccaataggactgca |
31002338 |
T |
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