View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_high_42 (Length: 328)
Name: NF6533_high_42
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 16224959 - 16225255
Alignment:
| Q |
20 |
tataatccctaaaccctattcttattgcctattggtaaccactgtactttgcggctgttgtgaagatcaagttataattgctaggatagtttctatttgg |
119 |
Q |
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| T |
16224959 |
tataaaccctaaaccctatgtttattgcctattggtacccactgtactttgcggctgttgtgaagatcaagttataattgctaggatagtttctatttgg |
16225058 |
T |
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| Q |
120 |
ttcatgttagttttcaacaaagtgatttcaattatgttgtttgaacactttaaactagttattggttgttgtactctcaataatatgatgtagttctatg |
219 |
Q |
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| T |
16225059 |
ttcatgttagttttcaacaaagtgatttcaattatgttgtttgaacactttaaactagttattggttgttgtattcacaata--atgatgtagttctatg |
16225156 |
T |
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| Q |
220 |
cttcttggtgcaagaacaaatactacataaagtgtaagcccttggttgtaattgtattttaggaaatatttactattttgtaattgatttttgcctttg |
318 |
Q |
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| T |
16225157 |
cttcttggtgcatgaacaaatactacataaagtgtaagcccttggttgtaattgtattttaggaaatatttactattttgtaattgattttagcctttg |
16225255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 16173654 - 16173589
Alignment:
| Q |
204 |
atgatgtagttctatgcttcttggtgcaagaacaaatactacataaagtgtaagcccttggttgta |
269 |
Q |
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| T |
16173654 |
atgatatagttctttgcttcttggtgtaagaacaaatcctatgtaaagtgtttgcctttggttgta |
16173589 |
T |
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