View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_high_49 (Length: 276)
Name: NF6533_high_49
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_high_49 |
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| [»] scaffold0236 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 22 - 265
Target Start/End: Complemental strand, 43704101 - 43703858
Alignment:
| Q |
22 |
agcaacactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43704101 |
agcaacactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggt |
43704002 |
T |
|
| Q |
122 |
gcaagccacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcag |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43704001 |
gcaagccacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcag |
43703902 |
T |
|
| Q |
222 |
ttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43703901 |
ttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
43703858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 22 - 265
Target Start/End: Complemental strand, 43715072 - 43714829
Alignment:
| Q |
22 |
agcaacactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43715072 |
agcaacactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggt |
43714973 |
T |
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| Q |
122 |
gcaagccacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcag |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43714972 |
gcaagccacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcag |
43714873 |
T |
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| Q |
222 |
ttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43714872 |
ttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
43714829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 43687247 - 43687000
Alignment:
| Q |
18 |
cagaagcaacactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttg |
117 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
43687247 |
cagaagaaacactagacatagtctttggaaactctttgtaataaaactcattttggccaataacattgaatgcttcagctataccagccaaacaaagttg |
43687148 |
T |
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| Q |
118 |
aggtgcaagccacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| | | ||||||| ||||||||||| | |||||||||||||| |
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| T |
43687147 |
aggtgcaagccacattgcagacattttcaacactccatgagtattattcaaaaatcctgcctgtattgctttctttctccttatactctcaaaaattgct |
43687048 |
T |
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| Q |
218 |
gcagttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
265 |
Q |
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||| || | |||||||||||||||||||||||||| |||||||||| |
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| T |
43687047 |
gcaactacaatgtgaagaaaattaaaaaacaacccaagtcccattctt |
43687000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 28 - 265
Target Start/End: Complemental strand, 43728800 - 43728563
Alignment:
| Q |
28 |
actagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagc |
127 |
Q |
| |
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|||||||||| || | ||||||||||||||||| || ||||| ||||||||| ||||||| ||| ||||||| ||||||||||||||||||||||| |
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| T |
43728800 |
actagacatagtcctcggaaactctttgtaatagaattcattttggccaatagcattgaatgcttcgcttataccacccaaacaaagttgaggtgcaagc |
43728701 |
T |
|
| Q |
128 |
cacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatca |
227 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||| ||||| | | ||||||| |||||||||| | |||||||| |||||||||| || |
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| T |
43728700 |
cacaatgcagacattttcaacacgccatgagtatcattcaaaaatcctgcctgaattgctttttttctccttatactctcaaaagcagctgcagttacca |
43728601 |
T |
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| Q |
228 |
agtgaagaaaattaaaaaacaacccaattcccattctt |
265 |
Q |
| |
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|||| |||||||| |||||||||||||||||||||||| |
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| T |
43728600 |
agtggagaaaatttaaaaacaacccaattcccattctt |
43728563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 265
Target Start/End: Complemental strand, 2690833 - 2690600
Alignment:
| Q |
32 |
gacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagccaca |
131 |
Q |
| |
|
|||||| |||| ||||| || |||| || |||||||| ||||| ||||||||||| ||| ||||| ||| |||| ||||||||||| |||||||| |
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| T |
2690833 |
gacatagtcttgggaaattcggtgtagtagaactcattttggcctataacattgaatgcttcagctattccacccaagcaaagttgaggaaaaagccaca |
2690734 |
T |
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| Q |
132 |
ttgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatcaagtg |
231 |
Q |
| |
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|||||||||| ||||||||| ||||| |||||| ||||||||| ||||||||| ||| ||||| |||||| | ||||| ||| |||| |||||| |
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| T |
2690733 |
ttgcagacatgttcaacactgaatgaggatcattaccatatccttcattgattgctcttcttcgccttatagtctcgacaattgatgcggttaccaagtg |
2690634 |
T |
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| Q |
232 |
aagaaaattaaaaaacaacccaattcccattctt |
265 |
Q |
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|||||| |||||||| || | |||||||||| |
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| T |
2690633 |
gagaaaagagaaaaacaatccgagtcccattctt |
2690600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 155
Target Start/End: Complemental strand, 25274174 - 25274045
Alignment:
| Q |
26 |
acactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaa |
125 |
Q |
| |
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|||||||||||| | ||||||||||| |||||||||||||||| ||||| || | ||||| ||| | ||||||||| | ||||||||||||||||| |
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| T |
25274174 |
acactagacatagtacttggaaactctgtgtaataaaactcattttggcctatgaaattgactgcttcagatataccagctagacaaagttgaggtgcaa |
25274075 |
T |
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| Q |
126 |
gccacattgcagacattttcaacactccat |
155 |
Q |
| |
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|||||| ||| ||||||| ||||||||||| |
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| T |
25274074 |
gccacaatgccgacatttccaacactccat |
25274045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 25274032 - 25273959
Alignment:
| Q |
192 |
ttctccttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
265 |
Q |
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||||||||| |||||||||||| |||||| ||| | ||| |||||| |||||||| ||||||||||||||| |
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| T |
25274032 |
ttctccttatagtctcaaaaatcgctgcatttaccgagtagagaaaagataaaaacaaaccaattcccattctt |
25273959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 155
Target Start/End: Original strand, 23554 - 23683
Alignment:
| Q |
26 |
acactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaa |
125 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||||||||||||| ||||| || | |||| ||| | ||||||||||| ||| ||||||||||||| |
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| T |
23554 |
acactagacatagtacttggaaactctgtgtaataaaactcattttggcctatgaatttgactgcttcagatataccagccagacagagttgaggtgcaa |
23653 |
T |
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| Q |
126 |
gccacattgcagacattttcaacactccat |
155 |
Q |
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|||||| ||| || |||| ||| ||||||| |
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| T |
23654 |
gccacaatgccgaaatttccaaaactccat |
23683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 265
Target Start/End: Original strand, 23696 - 23769
Alignment:
| Q |
192 |
ttctccttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
265 |
Q |
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||||||||| ||||||||||||||||||| ||| ||||| |||||| |||||||| ||||||||||||||| |
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| T |
23696 |
ttctccttatagtctcaaaaattgctgcatttactaagtggagaaaagataaaaacaaaccaattcccattctt |
23769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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