View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_high_5 (Length: 741)
Name: NF6533_high_5
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 391 - 722
Target Start/End: Original strand, 12798168 - 12798501
Alignment:
| Q |
391 |
catgcacgtaagtcatagaatcaacatttaaagggaaacttttaaagattatgagttatcctcttgttgtctcattgtgcagatttagtgcatctttgtg |
490 |
Q |
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| T |
12798168 |
catgcacgtaagtcatagaatcaacatttaaagggaaacttttaaagattatgagttatcctcttgttgtctcattgtgcagatttagtgcatctttgtg |
12798267 |
T |
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| Q |
491 |
agtttcaaacttttctatcataaatcgttttatctcatgatcatatactttattttgggtcttagaaatctcaccaaatctatatatatgttagttgctt |
590 |
Q |
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| T |
12798268 |
agtttcaaacttttctatcataaaccgttttatctcatgattttatacttcattttgggtgttagaaatcttaccaaaac----tatatgttagttgctt |
12798363 |
T |
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| Q |
591 |
ctagtgttgt----gacttggcctttgatgttcaacactcacttgttgtggaaaagattcagttg-----aggatgtgagatgatttttgtttgggttac |
681 |
Q |
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| T |
12798364 |
ctagtgttgtgatcgacttggcctttgatgttcaacactcac---ttgtggaaaagattcagttgaggtaaggatgtgagatgatttttgtttgggttac |
12798460 |
T |
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| Q |
682 |
catgaaacaatgattggagacaaattagggaatgtctaatt |
722 |
Q |
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| T |
12798461 |
catgaaacaatgattggagacaaattagggaatgtctaatt |
12798501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 145 - 341
Target Start/End: Original strand, 12797306 - 12797502
Alignment:
| Q |
145 |
ccttagaattatatttggattaaggttccaaagttccattagtccaactaacacgaaggttttcttgagtagcaaaagagaattcgtaaaaaccatgcct |
244 |
Q |
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| T |
12797306 |
ccttagaattatatttggattaaggttccaaagttccattactccaactaacacgaaggttttcttgagtagcaaaagagaactcgtaaaaaccatgcct |
12797405 |
T |
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| Q |
245 |
agagacaccattattcagtttccaataggctttcacgaggtgagaagttttacatgtaggtcacctacacgaagaggtgtactacccttcgatgaaa |
341 |
Q |
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| T |
12797406 |
agagacaccattattcagtttccaataggctttcacgaggtgagaagttttacatgtaggtcacctacacgaagaggtgtactacccttcgatgaaa |
12797502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 12797064 - 12797273
Alignment:
| Q |
12 |
atgaatgcaattgaaaatacgatcttgggtctccaatactcttggggtaggtttaagattttgatattctcacattcaaaattagtattttatatatttg |
111 |
Q |
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| T |
12797064 |
atgaatgcaatagaaaatacgatcttgggtctccaatacacttggggtaggtttaagattttgatattctaacattcaaaatttgtattttatatatttg |
12797163 |
T |
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| Q |
112 |
aaggcttgaaatcattagtctaag-nnnnnnnnnccttagaattatatttggattaa-ggttccaaagttccattagtccaactaacacgaaggttttct |
209 |
Q |
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| T |
12797164 |
aaggcttgaaatcattagtccaagaaaaaaaaaaccttagaattatatttggattaagggttccaaagctccattactccaactaacacgaaggtcttct |
12797263 |
T |
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| Q |
210 |
tgagtagcaa |
219 |
Q |
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| T |
12797264 |
tgagtagcaa |
12797273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 12797713 - 12797766
Alignment:
| Q |
340 |
aaccataaatgaccaagggagaggttttgatcaaaggttggtggtggaaaccat |
393 |
Q |
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| T |
12797713 |
aaccataaatgaccaagggagaggttttgatcgaagattggtggtggaagccat |
12797766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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