View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_high_52 (Length: 267)
Name: NF6533_high_52
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_high_52 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 5685554 - 5685817
Alignment:
| Q |
1 |
ccacccaattaatttatgtctcttg----tgtacataactaaataaaaagtaataaatttattctagtttcaaaaatttacaaacaacttgtggacattt |
96 |
Q |
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| T |
5685554 |
ccacccaattaatttatgtctcttgcttgtgtacataactaaataaaaagtaataaatttattctagtttcaaaaatttacaaacaacttgtggacattt |
5685653 |
T |
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| Q |
97 |
tcagcctgacataacagctcctggagtagacatattggcagcatggacagctaaagacggccctacacgaatgacatttcaggataaacgagttgtaaag |
196 |
Q |
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| T |
5685654 |
tcagcctgacataacagctcctggagtagacatattggcagcatggacagctaaagacggccctacacgaatgacatttcaggataaacgagttgtaaag |
5685753 |
T |
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| Q |
197 |
tacaatatcttttcaggaacttcaatgtcttgccctcatgtttctgctgcatcagttcatctca |
260 |
Q |
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| T |
5685754 |
tacaatatcttttcaggaacttcaatgtcttgccctcatgtttctgctgcatcagttcttctca |
5685817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 88 - 260
Target Start/End: Original strand, 5697884 - 5698056
Alignment:
| Q |
88 |
tggacattttcagcctgacataacagctcctggagtagacatattggcagcatggacagctaaagacggccctacacgaatgacatttcaggataaacga |
187 |
Q |
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| T |
5697884 |
tggacttttacagcctgacataacagctcctggagtagacatattggcagcctggacagctaaagatggacctacacgaatgaattttcgcgataaacga |
5697983 |
T |
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| Q |
188 |
gttgtaaagtacaatatcttttcaggaacttcaatgtcttgccctcatgtttctgctgcatcagttcatctca |
260 |
Q |
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| T |
5697984 |
gttgttaagttcaatatcatttcaggaacttcaatgtcttgccctcatgtttctgctgcatcagttcttctca |
5698056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 33
Target Start/End: Original strand, 5697807 - 5697838
Alignment:
| Q |
2 |
cacccaattaatttatgtctcttgtgtacata |
33 |
Q |
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| T |
5697807 |
cacccaattaatttatgtctcttgtgtacata |
5697838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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