View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_high_59 (Length: 251)
Name: NF6533_high_59
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_high_59 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 8342231 - 8342466
Alignment:
| Q |
1 |
aaacataactgaaattcctcttgattattattgaaatataagtagcaatctgctagttacatttgagaacctcttcgatttat--agagtgaattggcga |
98 |
Q |
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| T |
8342231 |
aaacataactgaaattcctcttgattattattgaaatataagtagcaatctgctagttacatttgagaacctcttcgatttatagagagtgaattggtga |
8342330 |
T |
|
| Q |
99 |
ggtatcaattctatcgaaaagtgaggccggaagacagagggtgtgtctaatatgattggcctcggagttg--tgcctccaaaacgacaggagacggcaca |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
8342331 |
ggtatcaattctatcgaaaagtgaggccggaagacagagggtgtgtctgatatgattggcctcggagtggcatgcctccaaaacgacaggagacggcaca |
8342430 |
T |
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| Q |
197 |
tccaccaccgttggaggtggaggcaacaacagtatc |
232 |
Q |
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||||||||| |||||||||||||||||||||||||| |
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| T |
8342431 |
tccaccaccattggaggtggaggcaacaacagtatc |
8342466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 3228318 - 3228110
Alignment:
| Q |
1 |
aaacataactgaaattcctcttgattattattgaaatataagtagcaatctgctagttacatttgagaacctcttcgatttat--agagtgaattggcga |
98 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||||||||| |
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| T |
3228318 |
aaacataactgaaattcctcttgattattattgaaatataagtagcaatctgccagttacatctgggaacctcttcgatttatagagagtgaattggcga |
3228219 |
T |
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| Q |
99 |
ggtatcaattctatcgaaaagtgaggccggaagacagagggtgtgtctaatatgattggcctcggagttg--tgcctccaaaacgacaggagacggcaca |
196 |
Q |
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|||||||||||||| ||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||| | ||||||||||| |||||||| ||||||| |
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| T |
3228218 |
ggtatcaattctattgaaaagtgaggtcggaagacaga-ggtgtttctgatatgattggcctcggagtggcatgcctccaaaatgacaggagtcggcaca |
3228120 |
T |
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| Q |
197 |
tccaccaccg |
206 |
Q |
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|||||||||| |
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| T |
3228119 |
tccaccaccg |
3228110 |
T |
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