View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6533_high_6 (Length: 735)

Name: NF6533_high_6
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6533_high_6
NF6533_high_6
[»] chr3 (21 HSPs)
chr3 (1-643)||(49917211-49917853)
chr3 (652-727)||(39020146-39020221)
chr3 (652-727)||(10206960-10207041)
chr3 (652-727)||(24482950-24483031)
chr3 (652-727)||(49363238-49363319)
chr3 (652-727)||(50206957-50207038)
chr3 (672-727)||(46253651-46253706)
chr3 (673-727)||(11633643-11633697)
chr3 (652-727)||(37508485-37508566)
chr3 (670-727)||(30909056-30909113)
chr3 (675-727)||(390841-390893)
chr3 (652-727)||(39671084-39671166)
chr3 (652-727)||(8821633-8821714)
chr3 (652-727)||(44677471-44677552)
chr3 (652-727)||(36121829-36121905)
chr3 (671-727)||(55400027-55400083)
chr3 (672-727)||(46019491-46019546)
chr3 (685-727)||(24645398-24645440)
chr3 (670-727)||(32767703-32767760)
chr3 (670-727)||(33375887-33375944)
chr3 (670-711)||(48405437-48405478)
[»] chr2 (16 HSPs)
chr2 (257-375)||(4145611-4145729)
chr2 (204-363)||(4142023-4142182)
chr2 (241-324)||(38859234-38859317)
chr2 (652-727)||(13347802-13347883)
chr2 (652-727)||(35589374-35589455)
chr2 (670-727)||(39213757-39213814)
chr2 (670-727)||(39449294-39449351)
chr2 (652-711)||(18176943-18177008)
chr2 (652-727)||(36802899-36802980)
chr2 (671-727)||(6999055-6999111)
chr2 (652-711)||(17779394-17779454)
chr2 (670-726)||(29684600-29684656)
chr2 (652-727)||(37257452-37257534)
chr2 (685-727)||(9634423-9634465)
chr2 (670-711)||(12889835-12889876)
chr2 (670-727)||(16677699-16677756)
[»] chr7 (15 HSPs)
chr7 (640-727)||(43573530-43573623)
chr7 (675-727)||(38779731-38779783)
chr7 (652-727)||(13162922-13163003)
chr7 (652-727)||(19786066-19786147)
chr7 (652-727)||(39231715-39231796)
chr7 (670-727)||(16980324-16980381)
chr7 (670-727)||(29002635-29002692)
chr7 (647-727)||(39331983-39332069)
chr7 (652-727)||(13729729-13729810)
chr7 (652-727)||(21559801-21559882)
chr7 (670-727)||(28036771-28036828)
chr7 (670-727)||(32815195-32815252)
chr7 (672-727)||(44184546-44184601)
chr7 (670-727)||(11564920-11564977)
chr7 (670-711)||(41402534-41402575)
[»] chr6 (14 HSPs)
chr6 (670-727)||(754425-754482)
chr6 (652-727)||(3610948-3611029)
chr6 (645-727)||(35213548-35213636)
chr6 (670-727)||(13143369-13143426)
chr6 (652-727)||(2075438-2075519)
chr6 (652-727)||(4820254-4820335)
chr6 (652-727)||(30036781-30036862)
chr6 (670-727)||(30152517-30152574)
chr6 (673-721)||(2777309-2777357)
chr6 (671-727)||(11547516-11547572)
chr6 (671-727)||(18141288-18141344)
chr6 (671-727)||(20822855-20822911)
chr6 (675-727)||(34504052-34504104)
chr6 (652-708)||(14986751-14986809)
[»] chr1 (26 HSPs)
chr1 (646-727)||(36577399-36577486)
chr1 (670-727)||(51191815-51191872)
chr1 (647-727)||(3603109-3603195)
chr1 (647-727)||(35136842-35136928)
chr1 (652-727)||(8411705-8411786)
chr1 (652-727)||(46082108-46082189)
chr1 (670-727)||(9008252-9008309)
chr1 (670-727)||(21340549-21340606)
chr1 (670-721)||(1790535-1790586)
chr1 (652-727)||(756859-756940)
chr1 (652-727)||(902641-902722)
chr1 (652-711)||(1852954-1853019)
chr1 (652-711)||(33024574-33024639)
chr1 (670-727)||(33054075-33054132)
chr1 (670-727)||(50328128-50328185)
chr1 (671-727)||(10890033-10890089)
chr1 (671-727)||(13489690-13489746)
chr1 (671-727)||(32915059-32915115)
chr1 (652-711)||(7128121-7128186)
chr1 (671-721)||(15705055-15705105)
chr1 (673-727)||(20565105-20565159)
chr1 (673-727)||(26837482-26837536)
chr1 (673-727)||(29586023-29586077)
chr1 (673-726)||(4514442-4514495)
chr1 (678-727)||(36779256-36779305)
chr1 (670-711)||(48325994-48326035)
[»] chr4 (23 HSPs)
chr4 (652-727)||(624299-624380)
chr4 (652-727)||(22819652-22819733)
chr4 (673-727)||(47965769-47965823)
chr4 (670-727)||(46405961-46406018)
chr4 (644-727)||(14451388-14451477)
chr4 (652-727)||(30079849-30079930)
chr4 (652-727)||(39344967-39345048)
chr4 (652-727)||(41486130-41486211)
chr4 (670-711)||(21260325-21260366)
chr4 (670-727)||(47099049-47099106)
chr4 (671-727)||(6141765-6141821)
chr4 (652-727)||(14010105-14010186)
chr4 (670-711)||(5932160-5932201)
chr4 (670-727)||(13086049-13086106)
chr4 (241-337)||(4800370-4800466)
chr4 (671-727)||(9118851-9118907)
chr4 (646-727)||(26206964-26207051)
chr4 (242-390)||(30479741-30479889)
chr4 (673-717)||(36111393-36111437)
chr4 (672-727)||(38338909-38338964)
chr4 (652-727)||(14527647-14527728)
chr4 (652-727)||(51887666-51887747)
chr4 (670-727)||(51194296-51194353)
[»] chr8 (21 HSPs)
chr8 (670-727)||(7592876-7592933)
chr8 (645-727)||(16872143-16872231)
chr8 (671-727)||(30136002-30136058)
chr8 (672-727)||(7955994-7956049)
chr8 (652-727)||(1633877-1633958)
chr8 (670-727)||(11657987-11658044)
chr8 (645-727)||(16613630-16613718)
chr8 (670-727)||(37783958-37784015)
chr8 (671-727)||(11017833-11017889)
chr8 (671-727)||(40739899-40739955)
chr8 (672-727)||(16327139-16327194)
chr8 (652-711)||(16966788-16966853)
chr8 (671-721)||(34018836-34018886)
chr8 (670-727)||(33589217-33589274)
chr8 (645-727)||(34718111-34718199)
chr8 (671-727)||(4658250-4658306)
chr8 (671-717)||(2730958-2731004)
chr8 (652-727)||(36110141-36110222)
chr8 (652-727)||(41520971-41521052)
chr8 (670-711)||(32847690-32847731)
chr8 (670-711)||(34490160-34490201)
[»] chr5 (17 HSPs)
chr5 (670-727)||(21064213-21064270)
chr5 (652-727)||(4430923-4431004)
chr5 (652-727)||(35098992-35099073)
chr5 (673-727)||(43441768-43441822)
chr5 (652-727)||(5042251-5042332)
chr5 (652-727)||(8267807-8267888)
chr5 (652-727)||(8675420-8675501)
chr5 (652-727)||(18842308-18842389)
chr5 (652-727)||(2688973-2689045)
chr5 (670-727)||(15267811-15267868)
chr5 (671-727)||(6517740-6517796)
chr5 (672-711)||(16437568-16437607)
chr5 (652-727)||(9977122-9977203)
chr5 (670-727)||(5821599-5821656)
chr5 (672-721)||(6446511-6446560)
chr5 (670-727)||(6931046-6931103)
chr5 (670-727)||(33620635-33620692)
[»] scaffold0687 (1 HSPs)
scaffold0687 (673-727)||(2227-2281)
[»] scaffold0321 (1 HSPs)
scaffold0321 (652-727)||(19639-19720)
[»] scaffold0221 (1 HSPs)
scaffold0221 (671-721)||(8242-8292)
[»] scaffold0471 (1 HSPs)
scaffold0471 (652-727)||(10-91)


Alignment Details
Target: chr3 (Bit Score: 597; Significance: 0; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 1 - 643
Target Start/End: Original strand, 49917211 - 49917853
Alignment:
Q  1 ccacacaaaataaccctaacaaattaaccattaacattttccaatattnnnnnnnccttaatattttgtgattcatttatcaccatttcaattccaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||    
T  49917211 ccacacaaaataaccctaacaaattaaccattaacattttccaatattaaaaaaaccctaatattttgtgattcatttatcaccatttcaattccaattt 49917310  T
Q  101 ccaccatctaaaccctccatgtattgcaaaatcatatcaacattcataatcaagaaaatgcaacatatagaaaattgnnnnnnngaaaagatggggaatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  49917311 ccaccatctaaaccctccatgtattgcaaaatcatatcaacattcataatcaagaaaatgcaacatatagaaaattgaaaaaaagaaaagatggggaatg 49917410  T
Q  201 attatgttaccgcataagcctcagagatctgtttgaaacgggcttcagcttcttttttattgttagggttcttgtcagggtgccatttcatagccaattt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49917411 attatgttaccgcataagcctcagagatctgtttgaaacgggcttcagcttcttttttattgttagggttcttgtcagggtgccatttcatagccaattt 49917510  T
Q  301 tctatatgctttcttcaaatcatcttctgtagcatttttatccaccttcaaaatgttatagtaatccacacccattttttctttctttctttgagaatct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49917511 tctatatgctttcttcaaatcatcttctgtagcatttttatccaccttcaaaatgttatagtaatccacacccattttttctttctttctttgagaatct 49917610  T
Q  401 gaattaatattgcaaatgttaggatataaaaatcttgagatttagattcttttgttggataccaaaattgtaaaatcaacaattcttcatgcaaagttga 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49917611 gaattaatattgcaaatgttaggatataaaaatcttgagatttagattcttttgttggataccaaaattgtaaaatcaacaattcttcatgcaaagttga 49917710  T
Q  501 taacgtttgagatcaacaaagcaaacaaaaattggttaattaaacaattcagaaatatgagagatttttcattggctttgcattggaaaagatttgaatg 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49917711 taacgtttgagatcaacaaagcaaacaaaaattggttaattaaacaattcagaaatatgagagatttttcattggctttgcattggaaaagatttgaatg 49917810  T
Q  601 ttacagcgccacgatttggtgtgcatgcattgttattattatt 643  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  49917811 ttacagcgccacgatttggtgtgcatgcattgttattattatt 49917853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 39020221 - 39020146
Alignment:
Q  652 aaatgatatttgaacatcgtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||||||   |||||||||| ||| |||||||||||||||| ||||||||| |||||||| |||||    
T  39020221 aaatgatatttgaacattcagacaacttttacaataactttttctctcatactcacattactttttactttatctc 39020146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 10207041 - 10206960
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  10207041 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctctcatactcacattactttttactttatctc 10206960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 24483031 - 24482950
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  24483031 aaatgatatttgaacatccattttgtgacaacttttgcaacaactttctctctcatactcacattactttttactttatctc 24482950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 49363319 - 49363238
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  49363319 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctctcatactcacattactttttactttatctc 49363238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 50207038 - 50206957
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  50207038 aaatgatatttgaacatccattttgtgacaacttttgcaacaactttctctctcatactcacattactttttactttatctc 50206957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 672 - 727
Target Start/End: Original strand, 46253651 - 46253706
Alignment:
Q  672 gacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||    
T  46253651 gacaacttttgcaacaattttttctctcatactcacattactttttactttatctc 46253706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 673 - 727
Target Start/End: Original strand, 11633643 - 11633697
Alignment:
Q  673 acaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  11633643 acaacttttgcaacaactttctctctcatattcacattactttttactttatctc 11633697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 37508566 - 37508485
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      |||| |||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  37508566 aaatgatatttgaacatccatttagtgataacttttgcaacaactttctctctcatactcacattactttttactttatctc 37508485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 670 - 727
Target Start/End: Original strand, 30909056 - 30909113
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||| |||||||| |||||    
T  30909056 gtgacaacttttgcaacaactttctctcttatattcacattactttttactttatctc 30909113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 675 - 727
Target Start/End: Original strand, 390841 - 390893
Alignment:
Q  675 aacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||||||||||||||||| ||||||||  |||||||| |||||    
T  390841 aacttttgcaacaactttttctctcatactcacattattttttactttatctc 390893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 39671166 - 39671084
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctc-tcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||||||| |||| ||||| ||||||||| |||||||| |||||    
T  39671166 aaatgatatttgaacatctatttagtgacaacttttgcaacaactttctctcttcatactcacattactttttactttatctc 39671084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 727
Target Start/End: Original strand, 8821633 - 8821714
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||| ||||||||| ||||||||| ||||||||  |||||||| |||||    
T  8821633 aaatgatatttgaacatctatttagtgacaacttttgtaacaactttctctctcatactcacattattttttactttatctc 8821714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 44677552 - 44677471
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||| ||| ||||||||| ||||||||  |||||||| |||||    
T  44677552 aaatgatatttgaacatccatttagtgacaacttttgcaacaattttctctctcatactcacattattttttactttatctc 44677471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 652 - 727
Target Start/End: Original strand, 36121829 - 36121905
Alignment:
Q  652 aaatgatatttgaacatcg-tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||||||   |||||||||||||||||||||| | ||| ||| |||| |||| |||||||| |||||    
T  36121829 aaatgatatttgaacataaatgacaacttttgcaacaactttctttcttatactcacgttactttttactttatctc 36121905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 671 - 727
Target Start/End: Original strand, 55400027 - 55400083
Alignment:
Q  671 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||  |||||||| ||||||||| ||||||||| |||||||| |||||    
T  55400027 tgacaacttttgtgacaactttctctctcatactcacattactttttactttatctc 55400083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 727
Target Start/End: Original strand, 46019491 - 46019546
Alignment:
Q  672 gacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||  |||||||| ||||||||| ||||||||| |||||||| |||||    
T  46019491 gacaacttttgtgacaactttctctctcatactcacattactttttactttatctc 46019546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 685 - 727
Target Start/End: Original strand, 24645398 - 24645440
Alignment:
Q  685 acaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||||||| ||||||||| |||||||| |||||    
T  24645398 acaactttttctctcatactcacattactttttactttatctc 24645440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 727
Target Start/End: Original strand, 32767703 - 32767760
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||||| || ||| ||||||||| ||||||||  |||||||| |||||    
T  32767703 gtgacaacttttgcaataattttctctctcatactcacattattttttactttatctc 32767760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 727
Target Start/End: Original strand, 33375887 - 33375944
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||| |||||| ||| ||||||||| ||||||||  |||||||| |||||    
T  33375887 gtgacaacttttacaacaattttctctctcatactcacattattttttactttatctc 33375944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 711
Target Start/End: Original strand, 48405437 - 48405478
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacatta 711  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||    
T  48405437 gtgacaacttttgtaacaactttctctctcatactcacatta 48405478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 257 - 375
Target Start/End: Complemental strand, 4145729 - 4145611
Alignment:
Q  257 ttattgttagggttcttgtcagggtgccatttcatagccaattttctatatgctttcttcaaatcatcttctgtagcatttttatccaccttcaaaatgt 356  Q
    ||||||| ||| ||||||||||||||||||||||| || | ||||||||||||||||||||| ||||| ||||| ||||| || || |||| |||||| |    
T  4145729 ttattgtcaggattcttgtcagggtgccatttcatggcaagttttctatatgctttcttcaattcatcgtctgtggcattcttgtcaacctccaaaatct 4145630  T
Q  357 tatagtaatccacacccat 375  Q
     |||||| |||| ||||||    
T  4145629 catagtagtccaaacccat 4145611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 204 - 363
Target Start/End: Complemental strand, 4142182 - 4142023
Alignment:
Q  204 atgttaccgcataagcctcagagatctgtttgaaacgggcttcagcttcttttttattgttaggg-ttcttgtcagggtgccatttcatagccaattttc 302  Q
    |||||||| ||||||| || || |||| ||||||   ||||||||| ||||||||||| | |||| ||||| ||||||||||||||||| || | |||||    
T  4142182 atgttacctcataagcttcggatatctctttgaatttggcttcagcgtcttttttatt-tgagggattcttatcagggtgccatttcatggcaagttttc 4142084  T
Q  303 tatatgctttcttcaaatcatcttctgtagcatttttatccaccttcaaaatgttatagta 363  Q
    | || ||||||||||| || |||||||| ||||| || || ||||||||||| || |||||    
T  4142083 tgtaagctttcttcaactcttcttctgtggcattcttgtcaaccttcaaaatcttgtagta 4142023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 241 - 324
Target Start/End: Complemental strand, 38859317 - 38859234
Alignment:
Q  241 ggcttcagcttcttttttattgttagggttcttgtcagggtgccatttcatagccaattttctatatgctttcttcaaatcatc 324  Q
    |||||||||||||||||| || ||||||||||| ||||| ||||| ||||| || | |||||| || ||||||||||| |||||    
T  38859317 ggcttcagcttcttttttgttattagggttcttatcaggatgccacttcatggcgagttttctgtaagctttcttcaagtcatc 38859234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 13347883 - 13347802
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||| ||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  13347883 aaatgatatttgaacatccattttgtgacaatttttgcaacaactttctctctcatactcacattactttttactttatctc 13347802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 35589455 - 35589374
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||| ||| ||||||||| ||||||||| |||||||| |||||    
T  35589455 aaatgatatttgaacatccattttgtgacaacttttgcaacaattttctctctcatactcacattactttttactttatctc 35589374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 670 - 727
Target Start/End: Complemental strand, 39213814 - 39213757
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  39213814 gtgacaacttttgcaacaactttatctctcatactcacattattttttactttatctc 39213757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 670 - 727
Target Start/End: Original strand, 39449294 - 39449351
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||| |||||||| |||||    
T  39449294 gtgacaacttttgcaacaactttctctctcatactcagattactttttactttatctc 39449351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 711
Target Start/End: Original strand, 18176943 - 18177008
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacatta 711  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||    
T  18176943 aaatgatatttgaacatctatttagtgacaacttttgcaacaactttctctctcatactcacatta 18177008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 727
Target Start/End: Original strand, 36802899 - 36802980
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      |||||||||||||| |||||||| ||||||||| ||||||||  |||||||| |||||    
T  36802899 aaatgatatttgaacatccattttgtgacaacttttgctacaactttctctctcatactcacattattttttactttatctc 36802980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 671 - 727
Target Start/End: Complemental strand, 6999111 - 6999055
Alignment:
Q  671 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||  |||||||| ||||||||| ||||||||| |||||||| |||||    
T  6999111 tgacaacttttgtgacaactttctctctcatactcacattactttttactttatctc 6999055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 652 - 711
Target Start/End: Original strand, 17779394 - 17779454
Alignment:
Q  652 aaatgatatttgaacatc-gtgacaacttttgcaacaactttttctctcatagtcacatta 711  Q
    |||| ||||||||||||  ||||||| ||||||||||||||||||||||||| | ||||||    
T  17779394 aaataatatttgaacattagtgacaatttttgcaacaactttttctctcatacttacatta 17779454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 670 - 726
Target Start/End: Complemental strand, 29684656 - 29684600
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatct 726  Q
    ||||||| ||||||||||||||| ||||||||| |||| |||| |||||||| ||||    
T  29684656 gtgacaatttttgcaacaactttctctctcatactcaccttactttttactttatct 29684600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 652 - 727
Target Start/End: Original strand, 37257452 - 37257534
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctca-tagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||| || ||||||||  |||||||| |||||    
T  37257452 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctctcattactcacattattttttactttatctc 37257534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 685 - 727
Target Start/End: Complemental strand, 9634465 - 9634423
Alignment:
Q  685 acaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||||||| ||||||||| |||||||| |||||    
T  9634465 acaactttttctctcatactcacattactttttactttatctc 9634423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 711
Target Start/End: Complemental strand, 12889876 - 12889835
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacatta 711  Q
    |||||||||||||| |||||||| ||||||||| ||||||||    
T  12889876 gtgacaacttttgctacaactttctctctcatactcacatta 12889835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 727
Target Start/End: Original strand, 16677699 - 16677756
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||| ||| ||| | ||| ||||||||| |||||||| |||||    
T  16677699 gtgacaacttttgcaacaattttctcttttatattcacattactttttactttatctc 16677756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 640 - 727
Target Start/End: Complemental strand, 43573623 - 43573530
Alignment:
Q  640 tattattatgacaaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||| ||| ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  43573623 tattattttgagaaatgatatttgaacatctattttgtgacaacttttgcaacaactttctctctcatattcacattactttttactttatctc 43573530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 675 - 727
Target Start/End: Complemental strand, 38779783 - 38779731
Alignment:
Q  675 aacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  38779783 aacttttgcaacaactttttctctcatactcacattattttttacttcatctc 38779731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 652 - 727
Target Start/End: Original strand, 13162922 - 13163003
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||| ||||| |||||||| |||||    
T  13162922 aaatgatatttgaacatctatttagtgacaacttttgcaacaactttctctctcatactcatattactttttactttatctc 13163003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 19786147 - 19786066
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||||||| |||| |||| ||||||||| |||||||| |||||    
T  19786147 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctcacatactcacattactttttactttatctc 19786066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 39231796 - 39231715
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  39231796 aaatgatatttgaacatccagttagtgacaacttttgcaacaactttctctctcatactcacattattttttactttatctc 39231715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 670 - 727
Target Start/End: Original strand, 16980324 - 16980381
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||| |||||||| |||||    
T  16980324 gtgacaacttttgcaacaactttctctcttatactcacattactttttactttatctc 16980381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 670 - 727
Target Start/End: Original strand, 29002635 - 29002692
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||||||| |||||| || ||||||||| |||||||| |||||    
T  29002635 gtgacaacttttgcaacaactttctctctcgtaatcacattactttttactttatctc 29002692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 647 - 727
Target Start/End: Original strand, 39331983 - 39332069
Alignment:
Q  647 atgacaaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||| ||||||||||||||||||      ||||||||||||| ||||||||| ||||| ||| ||||||||| |||||||| |||||    
T  39331983 atgagaaatgatatttgaacatccatttagtgacaacttttgtaacaactttctctcttatactcacattactttttactttatctc 39332069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 727
Target Start/End: Original strand, 13729729 - 13729810
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||||||| | ||||||| ||||||||  |||||||| |||||    
T  13729729 aaatgatatttgaacatccattttgtgacaacttttgcaacaactttctttctcatactcacattattttttactttatctc 13729810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 727
Target Start/End: Original strand, 21559801 - 21559882
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      |||||||||||||| |||||||| ||||||||| ||||||||  |||||||| |||||    
T  21559801 aaatgatatttgaacatccattctgtgacaacttttgctacaactttatctctcatactcacattattttttactttatctc 21559882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 727
Target Start/End: Original strand, 28036771 - 28036828
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||  |||||||| |||||    
T  28036771 gtgacaacttttgcaacaactttctctcttatactcacattattttttactttatctc 28036828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 727
Target Start/End: Original strand, 32815195 - 32815252
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||  |||||||| |||||    
T  32815195 gtgacaatttttgcaacaattttttctctcatactcacattattttttactttatctc 32815252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 727
Target Start/End: Complemental strand, 44184601 - 44184546
Alignment:
Q  672 gacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||  |||||||| ||||||||| ||||||||| |||||||| |||||    
T  44184601 gacaacttttgtgacaactttctctctcatactcacattactttttactttatctc 44184546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 727
Target Start/End: Original strand, 11564920 - 11564977
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||| | |||||| ||||||||| ||||||||  |||||||| |||||    
T  11564920 gtgacaacttttgctataactttctctctcatactcacattattttttactttatctc 11564977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 711
Target Start/End: Original strand, 41402534 - 41402575
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacatta 711  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||    
T  41402534 gtgacaacttttgcaacaactttctctctcatactcatatta 41402575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 670 - 727
Target Start/End: Complemental strand, 754482 - 754425
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||    
T  754482 gtgacaacttttgcaacaactttttctctcatactcacattactttttactttatctc 754425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 3611029 - 3610948
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      |||| |||||||||||||||||||||||||||| ||||||||| |||||||| |||||    
T  3611029 aaatgatatttgaacatccatttagtgataacttttgcaacaactttttctctcatactcacattactttttactttatctc 3610948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 645 - 727
Target Start/End: Complemental strand, 35213636 - 35213548
Alignment:
Q  645 ttatgacaaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||| ||||||||||||||||||      ||||||||||||| ||||||||| ||||||||| ||||||||| |||||||| |||||    
T  35213636 ttatgagaaatgatatttgaacatctattttgtgacaacttttgtaacaactttctctctcatactcacattactttttactttatctc 35213548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 670 - 727
Target Start/End: Complemental strand, 13143426 - 13143369
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  13143426 gtgacaatttttgcaacaactttctctctcatactcacattactttttactttatctc 13143369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 2075519 - 2075438
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      |||||| |||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  2075519 aaatgatatttgaacatccatttagtgacagcttttgcaacaactttctctctcatactcacattattttttactttatctc 2075438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 727
Target Start/End: Original strand, 4820254 - 4820335
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      |||| |||||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  4820254 aaatgatatttgaacatccatttagtgataacttttgcaacaactttctctctcatactcacattattttttactttatctc 4820335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 30036862 - 30036781
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| |||||| |  |||||||| |||||    
T  30036862 aaatgatatttgaacatctatttagtgacaacttttgcaacaactttctctctcataatcacataattttttactttatctc 30036781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 727
Target Start/End: Complemental strand, 30152574 - 30152517
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||||||| ||||||||| |||||| |  |||||||| |||||    
T  30152574 gtgacaacttttgcaacaactttctctctcatactcacataattttttactttatctc 30152517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 673 - 721
Target Start/End: Complemental strand, 2777357 - 2777309
Alignment:
Q  673 acaacttttgcaacaactttttctctcatagtcacattaccttttactt 721  Q
    |||||||||||||||| ||| ||||||||| ||||||||| ||||||||    
T  2777357 acaacttttgcaacaattttctctctcatactcacattactttttactt 2777309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 671 - 727
Target Start/End: Complemental strand, 11547572 - 11547516
Alignment:
Q  671 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||||||| ||| ||||||||| ||||||||  |||||||| |||||    
T  11547572 tgacaacttttgcaacaattttctctctcatactcacattattttttactttatctc 11547516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 671 - 727
Target Start/End: Complemental strand, 18141344 - 18141288
Alignment:
Q  671 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||  |||||||| ||||||||| ||||||||| |||||||| |||||    
T  18141344 tgacaacttttgtgacaactttctctctcatactcacattactttttactttatctc 18141288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 671 - 727
Target Start/End: Complemental strand, 20822911 - 20822855
Alignment:
Q  671 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||  |||||||| ||||||||| ||||||||| |||||||| |||||    
T  20822911 tgacaacttttgtgacaactttctctctcatactcacattactttttactttatctc 20822855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 675 - 727
Target Start/End: Original strand, 34504052 - 34504104
Alignment:
Q  675 aacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||||||| ||||||||| ||||||||| ||| |||| |||||    
T  34504052 aacttttgcaacaactttctctctcatactcacattacttttcactttatctc 34504104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 652 - 708
Target Start/End: Complemental strand, 14986809 - 14986751
Alignment:
Q  652 aaatgatatttgaacatc--gtgacaacttttgcaacaactttttctctcatagtcaca 708  Q
    |||||||||||||||||   ||||||||||||||||||| ||| ||||||||| |||||    
T  14986809 aaatgatatttgaacatttagtgacaacttttgcaacaattttctctctcatactcaca 14986751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 646 - 727
Target Start/End: Complemental strand, 36577486 - 36577399
Alignment:
Q  646 tatgacaaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||| ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  36577486 tatgagaaatgatatttgaacatccattttgtgacaacttttgcaacaactttctctctcatactcacattactttttactttatctc 36577399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 670 - 727
Target Start/End: Original strand, 51191815 - 51191872
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||| ||||||||||||||||||| ||||||||| |||||||| |||||    
T  51191815 gtgacaacttttgtaacaactttttctctcatactcacattacattttactttatctc 51191872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 647 - 727
Target Start/End: Original strand, 3603109 - 3603195
Alignment:
Q  647 atgacaaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||| ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||| ||||| || |||||    
T  3603109 atgagaaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctctcatactcacattactttttagtttatctc 3603195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 647 - 727
Target Start/End: Original strand, 35136842 - 35136928
Alignment:
Q  647 atgacaaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||| ||||||||||||||||||      ||||||||||||||||||||||| | ||||||| ||||||||| |||||||| |||||    
T  35136842 atgagaaatgatatttgaacatccattttgtgacaacttttgcaacaactttctttctcatactcacattactttttactttatctc 35136928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 8411786 - 8411705
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  8411786 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctctcatactcacattattttttactttatctc 8411705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 46082189 - 46082108
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||||||| |||| |||| ||||||||| |||||||| |||||    
T  46082189 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctcgcatactcacattactttttactttatctc 46082108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 670 - 727
Target Start/End: Original strand, 9008252 - 9008309
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  9008252 gtgacaacttttgcaacaactttctctctcatactcacattattttttactttatctc 9008309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 670 - 727
Target Start/End: Original strand, 21340549 - 21340606
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||||||| ||| ||||| ||||||||| |||||||| |||||    
T  21340549 gtgacaacttttgcaacaactttctctttcatactcacattactttttactttatctc 21340606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 670 - 721
Target Start/End: Original strand, 1790535 - 1790586
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttactt 721  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||    
T  1790535 gtgacaacttttgcaacaactttctctctcatactcaaattactttttactt 1790586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 727
Target Start/End: Original strand, 756859 - 756940
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||||||| | ||||||| ||||||||  |||||||| |||||    
T  756859 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttctttctcatactcacattattttttactttatctc 756940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 727
Target Start/End: Original strand, 902641 - 902722
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||  ||||||||| ||||||||| ||||||||| |||||||| |||||    
T  902641 aaatgatatttgaacatctatttagtgacaacttttataacaactttctctctcatactcacattactttttactttatctc 902722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 711
Target Start/End: Complemental strand, 1853019 - 1852954
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacatta 711  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||    
T  1853019 aaatgatatttgaacatctatttagtgacaacttttgcaacaactttctctctcatactcacatta 1852954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 711
Target Start/End: Complemental strand, 33024639 - 33024574
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacatta 711  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||    
T  33024639 aaatgatatttgaacatctatttagtgacaacttttgcaacaactttctctctcatactcacatta 33024574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 727
Target Start/End: Complemental strand, 33054132 - 33054075
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||| |||||||| ||||||||| ||||||||  |||||||| |||||    
T  33054132 gtgacaacttttgctacaactttctctctcatactcacattattttttactttatctc 33054075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 727
Target Start/End: Complemental strand, 50328185 - 50328128
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||||||| ||| ||||| |||| |||| |||||||| |||||    
T  50328185 gtgacaacttttgcaacaactttctctttcatactcacgttactttttactttatctc 50328128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 671 - 727
Target Start/End: Complemental strand, 10890089 - 10890033
Alignment:
Q  671 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||  |||||||| ||||||||| ||||||||| |||||||| |||||    
T  10890089 tgacaacttttgtgacaactttctctctcatactcacattactttttactttatctc 10890033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 671 - 727
Target Start/End: Original strand, 13489690 - 13489746
Alignment:
Q  671 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||  |||||||| ||||||||| ||||||||| |||||||| |||||    
T  13489690 tgacaacttttgtgacaactttctctctcatactcacattactttttactttatctc 13489746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 671 - 727
Target Start/End: Complemental strand, 32915115 - 32915059
Alignment:
Q  671 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||  |||||||| ||||||||| ||||||||| |||||||| |||||    
T  32915115 tgacaacttttgtgacaactttctctctcatactcacattactttttactttatctc 32915059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 652 - 711
Target Start/End: Original strand, 7128121 - 7128186
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacatta 711  Q
    ||||||||||||||||||      ||||||||||||||||||||||  ||||||||| ||||||||    
T  7128121 aaatgatatttgaacatccatttagtgacaacttttgcaacaacttcctctctcatattcacatta 7128186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 671 - 721
Target Start/End: Complemental strand, 15705105 - 15705055
Alignment:
Q  671 tgacaacttttgcaacaactttttctctcatagtcacattaccttttactt 721  Q
    ||||||||||||  |||||||| ||||||||| ||||||||| ||||||||    
T  15705105 tgacaacttttgtgacaactttctctctcatactcacattactttttactt 15705055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 673 - 727
Target Start/End: Complemental strand, 20565159 - 20565105
Alignment:
Q  673 acaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||| ||||||||||||||| ||||||||| |||||||||  ||||||| |||||    
T  20565159 acaatttttgcaacaactttctctctcatactcacattactctttactttatctc 20565105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 673 - 727
Target Start/End: Original strand, 26837482 - 26837536
Alignment:
Q  673 acaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||||| ||| ||||||||| |||| |||| |||||||| |||||    
T  26837482 acaacttttgcaacaattttctctctcatactcacgttactttttactttatctc 26837536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 673 - 727
Target Start/End: Original strand, 29586023 - 29586077
Alignment:
Q  673 acaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||||| ||| ||||||||| ||||||||  |||||||| |||||    
T  29586023 acaacttttgcaacaattttctctctcatactcacattattttttactttatctc 29586077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 673 - 726
Target Start/End: Complemental strand, 4514495 - 4514442
Alignment:
Q  673 acaacttttgcaacaactttttctctcatagtcacattaccttttacttcatct 726  Q
    |||||||||||||||||||| | ||||||| ||||||||  |||||||| ||||    
T  4514495 acaacttttgcaacaactttctatctcatattcacattattttttactttatct 4514442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 678 - 727
Target Start/End: Complemental strand, 36779305 - 36779256
Alignment:
Q  678 ttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||| ||||||| | ||||||| |||||||| |||||    
T  36779305 ttttgcaacaactttttttctcatacttacattactttttactttatctc 36779256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 711
Target Start/End: Original strand, 48325994 - 48326035
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacatta 711  Q
    ||||||||||||||||||||||| ||||||||| | ||||||    
T  48325994 gtgacaacttttgcaacaactttctctctcatacttacatta 48326035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 624380 - 624299
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  624380 aaatgatatttgaacatctatttagtgacaacttttgcaacaactttctctctcatactcacattactttttactttatctc 624299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 652 - 727
Target Start/End: Original strand, 22819652 - 22819733
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  22819652 aaatgatatttgaacatccattttgtgacaacttttgcaacaactttctctctcatactcacattactttttactttatctc 22819733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 673 - 727
Target Start/End: Original strand, 47965769 - 47965823
Alignment:
Q  673 acaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||| |||||    
T  47965769 acaacttttgcaacaactttttctctcatactcacattactttttactttatctc 47965823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 670 - 727
Target Start/End: Complemental strand, 46406018 - 46405961
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||||||||||||||||| ||||||||  |||||||| |||||    
T  46406018 gtgacaacttttgcaacaactttttctctcatactcacattaatttttactttatctc 46405961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 644 - 727
Target Start/End: Original strand, 14451388 - 14451477
Alignment:
Q  644 attatgacaaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||| ||||||||||||||||||      ||||||||||| ||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  14451388 attatgagaaatgatatttgaacatccatttagtgacaactttagcaacaactttctctctcatactcacattagtttttactttatctc 14451477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 652 - 727
Target Start/End: Original strand, 30079849 - 30079930
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  30079849 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctctcatactcacattattttttactttatctc 30079930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 39345048 - 39344967
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||| ||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  39345048 aaatgatatttgaacatccattttgtgacaatttttgcaacaactttctctctcatactcacattactttttactttatctc 39344967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 41486211 - 41486130
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      |||| |||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  41486211 aaatgatatttgaacatccatttagtgataacttttgcaacaactttctctctcatactcacattactttttactttatctc 41486130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 670 - 711
Target Start/End: Original strand, 21260325 - 21260366
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacatta 711  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  21260325 gtgacaacttttgcaacaactttttctctcatactcacatta 21260366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 670 - 727
Target Start/End: Original strand, 47099049 - 47099106
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||||||| |||| |||| ||||||||| |||||||| |||||    
T  47099049 gtgacaacttttgcaacaactttctctcacatactcacattactttttactttatctc 47099106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 671 - 727
Target Start/End: Complemental strand, 6141821 - 6141765
Alignment:
Q  671 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||||||||||| ||||||||| |||||||||  ||||||| |||||    
T  6141821 tgacaacttttgcaacaactttctctctcatactcacattactctttactttatctc 6141765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 14010186 - 14010105
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      |||||||||||| ||| |||||||||||||||| ||| ||||| |||||||| |||||    
T  14010186 aaatgatatttgaacatccattttgtgacaacttttacaataactttttctctcatactcatattactttttactttatctc 14010105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 711
Target Start/End: Complemental strand, 5932201 - 5932160
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacatta 711  Q
    ||||||||||||||||||||||| ||||||||| ||||||||    
T  5932201 gtgacaacttttgcaacaactttctctctcatactcacatta 5932160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 727
Target Start/End: Original strand, 13086049 - 13086106
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||| ||||| || |||||    
T  13086049 gtgacaacttttgtaacaactttctctctcatactcacattactttttattttatctc 13086106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 241 - 337
Target Start/End: Original strand, 4800370 - 4800466
Alignment:
Q  241 ggcttcagcttcttttttattgttagggttcttgtcagggtgccatttcatagccaattttctatatgctttcttcaaatcatcttctgtagcattt 337  Q
    ||||||||| ||||| || || ||||||||||| ||||| |||||||||||||| | ||| | ||| |||||||| | |||||| ||| | ||||||    
T  4800370 ggcttcagcatctttcttgttattagggttcttatcaggatgccatttcatagcaagtttccgataagctttcttgagatcatcatcttttgcattt 4800466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 671 - 727
Target Start/End: Complemental strand, 9118907 - 9118851
Alignment:
Q  671 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||||||| ||| ||||||||| ||||||||  |||||||| |||||    
T  9118907 tgacaacttttgcaacaattttctctctcataatcacattattttttactttatctc 9118851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 646 - 727
Target Start/End: Complemental strand, 26207051 - 26206964
Alignment:
Q  646 tatgacaaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||| ||||||||||||||||||      |||| || ||||||||||| ||| ||||||||| ||||||||| |||||||| |||||    
T  26207051 tatgagaaatgatatttgaacatccatttagtgataatttttgcaacaattttctctctcatattcacattactttttactttatctc 26206964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 242 - 390
Target Start/End: Complemental strand, 30479889 - 30479741
Alignment:
Q  242 gcttcagcttcttttttattgttagggttcttgtcagggtgccatttcatagccaattttctatatgctttcttcaaatcatcttctgtagcatttttat 341  Q
    |||||||| |||||||| ||| | || || || ||||||||||||||||| || | ||| ||||| |||||||| |  ||||| ||  | ||||| ||||    
T  30479889 gcttcagcatcttttttgttggttggatttttatcagggtgccatttcatggcaagtttcctataagctttcttgagttcatcgtcgttggcattcttat 30479790  T
Q  342 ccaccttcaaaatgttatagtaatccacacccattttttctttctttct 390  Q
    | |||| ||| || || ||||| || |||||||||| |||| |||||||    
T  30479789 caacctgcaagattttgtagtagtctacacccatttcttctctctttct 30479741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 673 - 717
Target Start/End: Complemental strand, 36111437 - 36111393
Alignment:
Q  673 acaacttttgcaacaactttttctctcatagtcacattacctttt 717  Q
    |||||||||||||||||||| ||||||||| ||||||||| ||||    
T  36111437 acaacttttgcaacaactttatctctcatactcacattacttttt 36111393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 727
Target Start/End: Complemental strand, 38338964 - 38338909
Alignment:
Q  672 gacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||  |||||||| ||||||||| ||||||||| |||||||| |||||    
T  38338964 gacaacttttgtgacaactttctctctcatactcacattactttttactttatctc 38338909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 652 - 727
Target Start/End: Original strand, 14527647 - 14527728
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      |||||||||||||| ||||||||  |||||||| ||||||||  |||||||| |||||    
T  14527647 aaatgatatttgaacatccattttgtgacaacttttgctacaactttcactctcatactcacattattttttactttatctc 14527728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 652 - 727
Target Start/End: Original strand, 51887666 - 51887747
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      |||||||||||||| |||||||| ||||||||| ||| ||||  |||||||| |||||    
T  51887666 aaatgatatttgaacatccattttgtgacaacttttgctacaactttctctctcatactcaaattattttttactttatctc 51887747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 727
Target Start/End: Original strand, 51194296 - 51194353
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||| |||||||||| ||| ||||| |||||| || |||||||| |||||    
T  51194296 gtgacaacttttacaacaactttctctttcatactcacatcactttttactttatctc 51194353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 670 - 727
Target Start/End: Original strand, 7592876 - 7592933
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||||||| ||||||||||||||||||  |||||||| |||||    
T  7592876 gtgacaacttttgcaacaactttatctctcatagtcacattattttttactttatctc 7592933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 645 - 727
Target Start/End: Complemental strand, 16872231 - 16872143
Alignment:
Q  645 ttatgacaaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||| ||||||||||||||||||      ||||||||||||||||||||||| ||| ||||| ||||||||| |||||||| |||||    
T  16872231 ttatgagaaatgatatttgaacatccattttgtgacaacttttgcaacaactttctctatcatactcacattactttttactttatctc 16872143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 671 - 727
Target Start/End: Complemental strand, 30136058 - 30136002
Alignment:
Q  671 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  30136058 tgacaacttttgcaacaactttctctctcatattcacattactttttactttatctc 30136002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 672 - 727
Target Start/End: Complemental strand, 7956049 - 7955994
Alignment:
Q  672 gacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  7956049 gacaacttttgcaacaactttctctctcatactcacattactttttactttatctc 7955994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 1633958 - 1633877
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  1633958 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctctcatactcacattattttttactttatctc 1633877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 670 - 727
Target Start/End: Complemental strand, 11658044 - 11657987
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||||||| ||||||||| ||||||||| ||||| || |||||    
T  11658044 gtgacaacttttgcaacaactttctctctcatactcacattactttttattttatctc 11657987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 645 - 727
Target Start/End: Original strand, 16613630 - 16613718
Alignment:
Q  645 ttatgacaaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||| ||||||||||||||||||      ||||||| |||||| |||||||||||||||||| ||||||||  |||||||| |||||    
T  16613630 ttatgagaaatgatatttgaacatctattttgtgacaatttttgctacaactttttctctcatactcacattattttttactttatctc 16613718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 670 - 727
Target Start/End: Complemental strand, 37784015 - 37783958
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||| |||||||| |||||    
T  37784015 gtgacaacttttgcaacaactttctctctcatactcagattactttttactttatctc 37783958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 671 - 727
Target Start/End: Original strand, 11017833 - 11017889
Alignment:
Q  671 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  11017833 tgacaacttttgcaacaactttctctctcatactcacattattttttactttatctc 11017889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 671 - 727
Target Start/End: Complemental strand, 40739955 - 40739899
Alignment:
Q  671 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||||||| ||||||||||||| ||||||||  |||||||| |||||    
T  40739955 tgacaacttttgcaacaattttttctctcatattcacattattttttactttatctc 40739899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 672 - 727
Target Start/End: Complemental strand, 16327194 - 16327139
Alignment:
Q  672 gacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||| |||||||| ||||||||| ||||||||| |||||||| |||||    
T  16327194 gacaacttttgcgacaactttctctctcatactcacattactttttactttatctc 16327139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 711
Target Start/End: Original strand, 16966788 - 16966853
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacatta 711  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||    
T  16966788 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctctcatactcacatta 16966853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 671 - 721
Target Start/End: Original strand, 34018836 - 34018886
Alignment:
Q  671 tgacaacttttgcaacaactttttctctcatagtcacattaccttttactt 721  Q
    |||||||||||||||||| ||| ||||||||| ||||||||| ||||||||    
T  34018836 tgacaacttttgcaacaattttctctctcatactcacattactttttactt 34018886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 727
Target Start/End: Complemental strand, 33589274 - 33589217
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||  |||||||| |||||    
T  33589274 gtgacaacttttgcaacaattttctctctcatactcacattattttttactttatctc 33589217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 645 - 727
Target Start/End: Original strand, 34718111 - 34718199
Alignment:
Q  645 ttatgacaaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||| ||||||||||||||||||      |||||||||||||  |||||||| ||||||||| ||||||||  |||||||| |||||    
T  34718111 ttatgagaaatgatatttgaacatccattttgtgacaacttttgttacaactttctctctcatactcacattattttttactttatctc 34718199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 671 - 727
Target Start/End: Complemental strand, 4658306 - 4658250
Alignment:
Q  671 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||  |||||||||||||||||| | ||||||| |||||||| |||||    
T  4658306 tgacaacttttgtgacaactttttctctcatacttacattactttttactttatctc 4658250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 671 - 717
Target Start/End: Complemental strand, 2731004 - 2730958
Alignment:
Q  671 tgacaacttttgcaacaactttttctctcatagtcacattacctttt 717  Q
    |||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  2731004 tgacaacttttgtaacaactttctctctcatattcacattatctttt 2730958  T

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Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 652 - 727
Target Start/End: Original strand, 36110141 - 36110222
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      |||| |||||||||||||| ||| ||| ||||| ||||||||| |||||||| |||||    
T  36110141 aaatgatatttgaacatccatttagtgaaaacttttgcaacaattttctctttcatactcacattactttttactttatctc 36110222  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 652 - 727
Target Start/End: Original strand, 41520971 - 41521052
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      |||| |||||||||||||| ||| ||||||||| ||||||||  |||||||| |||||    
T  41520971 aaatgatatttgaacatccatttagtgataacttttgcaacaattttctctctcatactcacattattttttactttatctc 41521052  T

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Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 711
Target Start/End: Complemental strand, 32847731 - 32847690
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacatta 711  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||    
T  32847731 gtgacaacttttgcaacaactttctctcttatactcacatta 32847690  T

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Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 711
Target Start/End: Complemental strand, 34490201 - 34490160
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacatta 711  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||    
T  34490201 gtgacaacttttgcaacaactttctctcttatactcacatta 34490160  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 670 - 727
Target Start/End: Complemental strand, 21064270 - 21064213
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  21064270 gtgacaacttttgcaacaactttctctctcatactcacattactttttactttatctc 21064213  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 4431004 - 4430923
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||||||||||||||||| |||||| |  |||||||| |||||    
T  4431004 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttttctctcatactcacatcattttttactttatctc 4430923  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 35099073 - 35098992
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  35099073 aaatgatatttgaacatctatttagtgacaacttttgcaacaactttctctctcatactcacattattttttactttatctc 35098992  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 673 - 727
Target Start/End: Original strand, 43441768 - 43441822
Alignment:
Q  673 acaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  43441768 acaacttttgcaacaactttctctctcatactcacattactttttactttatctc 43441822  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 727
Target Start/End: Original strand, 5042251 - 5042332
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||| ||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  5042251 aaatgatatttgaacatccatttagtgacaatttttgcaacaactttatctctcatactcacattattttttactttatctc 5042332  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 8267888 - 8267807
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||| ||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  8267888 aaatgatatttgaacatccatttagtgacaatttttgcaacaactttctctctcatactcacattattttttactttatctc 8267807  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 8675501 - 8675420
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      |||| |||||||||||||| ||| ||||||||| ||||||||| |||||||| |||||    
T  8675501 aaatgatatttgaacatccattttgtgataacttttgcaacaattttctctctcatactcacattactttttactttatctc 8675420  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 18842389 - 18842308
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      |||| |||||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  18842389 aaatgatatttgaacatccatttagtgataacttttgcaacaactttctctctcatactcacattattttttactttatctc 18842308  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 2689045 - 2688973
Alignment:
Q  652 aaatgatatttgaacatcgtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||||||   ||||||||||||||||||||| ||| ||||| | ||||||  |||||||| |||||    
T  2689045 aaatgatatttgaacat---gacaacttttgcaacaactttctctttcatatttacattattttttactttatctc 2688973  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 727
Target Start/End: Original strand, 15267811 - 15267868
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||  |||||||| |||||    
T  15267811 gtgacaacttttgcaacaactttctctctcatattcatattattttttactttatctc 15267868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 671 - 727
Target Start/End: Original strand, 6517740 - 6517796
Alignment:
Q  671 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||  |||||||| ||||||||| ||||||||| |||||||| |||||    
T  6517740 tgacaacttttgtgacaactttctctctcatactcacattactttttactttatctc 6517796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 711
Target Start/End: Complemental strand, 16437607 - 16437568
Alignment:
Q  672 gacaacttttgcaacaactttttctctcatagtcacatta 711  Q
    ||||||||||||||||||||| ||||||||| ||||||||    
T  16437607 gacaacttttgcaacaactttctctctcatactcacatta 16437568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 652 - 727
Target Start/End: Original strand, 9977122 - 9977203
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||| ||| ||  ||||| ||||||||| |||||||| |||||    
T  9977122 aaatgatatttgaacatccatttagtgacaacttttgcaacaattttctcaatcatactcacattactttttactttatctc 9977203  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 727
Target Start/End: Complemental strand, 5821656 - 5821599
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||| ||||||||||| ||||||||||||| | ||||||  |||||||| |||||    
T  5821656 gtgacaatttttgcaacaattttttctctcatacttacattattttttactttatctc 5821599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 721
Target Start/End: Complemental strand, 6446560 - 6446511
Alignment:
Q  672 gacaacttttgcaacaactttttctctcatagtcacattaccttttactt 721  Q
    |||||||||||  |||||||| ||||||||| ||||||||| ||||||||    
T  6446560 gacaacttttgtgacaactttctctctcatactcacattactttttactt 6446511  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 727
Target Start/End: Complemental strand, 6931103 - 6931046
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||| |||||||||||||||||| ||| ||||| ||||||||  |||||||| |||||    
T  6931103 gtgataacttttgcaacaactttatctttcatactcacattattttttactttatctc 6931046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 727
Target Start/End: Original strand, 33620635 - 33620692
Alignment:
Q  670 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||| ||||||||||||| | | ||||  |||||||| |||||    
T  33620635 gtgacaacttttgcaacaattttttctctcatacttatattattttttactttatctc 33620692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 673 - 727
Target Start/End: Original strand, 2227 - 2281
Alignment:
Q  673 acaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    |||||||||||||||||||| ||||||||||||||||||  |||||||| |||||    
T  2227 acaacttttgcaacaactttatctctcatagtcacattattttttactttatctc 2281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 652 - 727
Target Start/End: Original strand, 19639 - 19720
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| |||||||||  ||||||| |||||    
T  19639 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctctcatactcacattactctttactttatctc 19720  T

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Target: scaffold0221 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 671 - 721
Target Start/End: Original strand, 8242 - 8292
Alignment:
Q  671 tgacaacttttgcaacaactttttctctcatagtcacattaccttttactt 721  Q
    |||||||||||||||||||||| ||||||||| ||| ||||| ||||||||    
T  8242 tgacaacttttgcaacaactttctctctcatattcatattactttttactt 8292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 652 - 727
Target Start/End: Original strand, 10 - 91
Alignment:
Q  652 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 727  Q
    ||||||||||||||||||      |||| |||||||||||||| ||| ||| ||||| ||||||||| |||||||| |||||    
T  10 aaatgatatttgaacatccatttagtgaaaacttttgcaacaattttctctttcatactcacattactttttactttatctc 91  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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