View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_high_70 (Length: 240)
Name: NF6533_high_70
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_high_70 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8578635 - 8578414
Alignment:
| Q |
1 |
tatttcttcctgcaatccatatactatttcatcctgcaagtcacgatgaaaaacaagaacaaaatagagtagtaagcaagcaatcaattttgaacacatg |
100 |
Q |
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| T |
8578635 |
tatttcttcctgcaatccatatactatttcatcctgcaagtcacgatgaaaaacaagaacaaaatagagtagtaagcaagcaatcaattttgaacacatg |
8578536 |
T |
|
| Q |
101 |
attaaaataacaatgccaattataaaattaaaggagaaaatgatgtagacctagttattgtaccctaacaccatcggtgatggatgtccttccccaagat |
200 |
Q |
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| T |
8578535 |
attaaaataacaatgccaattataaaattaaaggagaaaatgatgtagaccaagttattgtaccctaacaccatcggtgatggatgtccttccccaagat |
8578436 |
T |
|
| Q |
201 |
gagcgagttcaacacaggatag |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
8578435 |
gagcgagttcaacacaggatag |
8578414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 8554031 - 8554163
Alignment:
| Q |
1 |
tatttcttcctgcaatccatatactatttcatcctgcaagtcacgatgaaaaacaagaacaaaatagagtagtaagcaagcaatcaattttgaacacatg |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||| || |||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
8554031 |
tatttcttcctgcaatccatataatatttcatcctgcaaggcacaataaaaaacaagaacaaaatatactagtaagcaagcaatcaattttgaacac--- |
8554127 |
T |
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| Q |
101 |
attaaaataacaatgccaattataaaattaaaggag |
136 |
Q |
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| T |
8554128 |
attaaaataacaatgccaattatgaaattaaaggag |
8554163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 33443075 - 33443178
Alignment:
| Q |
1 |
tatttcttcctgcaatccatatactatttcatcctgcaagtcacgatgaaaa-acaagaacaaaatagagtagtaagcaagcaatcaattttgaacacat |
99 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||| |||||| |||||||||||||| | |||||||||||||| |||||||||| |||| |
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| T |
33443075 |
tatttcttcctgcaatccatataatatttcatcctgcaaggcacagtgaaaaaacaagaacaaaatatactagtaagcaagcaagcaattttgaatacat |
33443174 |
T |
|
| Q |
100 |
gatt |
103 |
Q |
| |
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|||| |
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|
| T |
33443175 |
gatt |
33443178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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