View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_high_9 (Length: 586)
Name: NF6533_high_9
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Complemental strand, 46766188 - 46765621
Alignment:
| Q |
1 |
gaaaagcttgggacccccttttggggcagggtcatgtttgcttagggtcctgcacatagnnnnnnnnnnnnctatttgtatgttgtatttgaatgagctt |
100 |
Q |
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| T |
46766188 |
gaaaagcttgggacccc-ttttggggcagggtcatgtttgcttagggtcctgcacatagttttttgtttttctatttgtatgttgtatttgaatgagctt |
46766090 |
T |
|
| Q |
101 |
atnnnnnnnnnnnnnn-gtacaaacactaagttgcttaatttccactatcttaaaatcatgattatgagagtctataagggatagaaaaggtacttgaat |
199 |
Q |
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| T |
46766089 |
ataaaaagaaaaaaaaagtacaaacactaagttgcttaatttccactatcttaaaatcatgattatgagagtctataagggatagaaaaggtacttgaat |
46765990 |
T |
|
| Q |
200 |
atggatggacacgtctcctgttcaaccttcccttctttagaaaaagtttagttcagtatatccaccggaatatggcaaaagttcgtccaactcaattctt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46765989 |
atggatggacacgtctcctgttcaaccttcccttctttagaaaaagtttagttcagtatatccaccggaatatggcaaaagttcgtccaactcaattctt |
46765890 |
T |
|
| Q |
300 |
gactgagaacaactcatacttttcttcaattttccgtgaggtgactcaacctcagcccaaaatatgccataaacaggtcggtggtctgaaaatcttgatt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46765889 |
gactgagaacaactcatacttttcttcaattttccgtgaggtgactcaacctcagcccaaaatatgccataaacaggtcggtggtctgaaaatcttgatt |
46765790 |
T |
|
| Q |
400 |
caccgcgaacataagacaattgatggagtccttctccataccatagaatacggtcacacctataaaaagaaaaatgttcatgtcttcgtaggttgtaaca |
499 |
Q |
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| T |
46765789 |
caccgcgaacataagacaattgatggagtccttctccataccatagaatacggtcacacctataaaaagaaaaatgttcatgtcttcgtaggttgtaaca |
46765690 |
T |
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| Q |
500 |
gtttaataaaattatatcatatatcatgaaacatacttcattttataaaatcctattaggtgatgtgat |
568 |
Q |
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| T |
46765689 |
gtttaataaaattatatcatatatcatgaaacatacttcattttataaaatcctattaggtgatgtgat |
46765621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 236 - 463
Target Start/End: Complemental strand, 1086291 - 1086064
Alignment:
| Q |
236 |
ttagaaaaagtttagttcagtatatccaccggaatatggcaaaagttcgtccaactcaattcttgactgagaacaactcatacttttcttcaattttccg |
335 |
Q |
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||||||||||||||| ||||| ||||| |||||||| |||||||| |||| | ||||| || ||||||| ||||||||||||||||||||||| |
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| T |
1086291 |
ttagaaaaagtttagctcagtgtatccgtgagaatatggtaaaagttcctccacttggattctggaacgagaacagctcatacttttcttcaattttcca |
1086192 |
T |
|
| Q |
336 |
tgaggtgactcaacctcagcccaaaatatgccataaacaggtcggtggtctgaaaatcttgattcaccgcgaacataagacaattgatggagtccttctc |
435 |
Q |
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|| |||||||||||| |||||||||| ||||||||| |||| ||||||||||||||| ||||| ||||| || ||||| | |||| | || ||||||| |
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| T |
1086191 |
tggtttgactcaacctcggcccaaaataagccataaaccggtctgtggtctgaaaatctcgattctccgcgtacgtaagatatttgacgtagaccttctc |
1086092 |
T |
|
| Q |
436 |
cataccatagaatacggtcacacctata |
463 |
Q |
| |
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||| ||| | |||||||||||||||||| |
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| T |
1086091 |
catgccacaaaatacggtcacacctata |
1086064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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