View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_low_12 (Length: 547)
Name: NF6533_low_12
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Original strand, 5242784 - 5243285
Alignment:
| Q |
1 |
gtcatgcaacattatttatttaatttatttgtcacattttgatacatatctatataaaccccttaaccatttgttttaaccacatagcttcgagtactta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
5242784 |
gtcatgcaacattatttatttaatttatttgtcacattttgata----tctatataaaccccttaaccatttattttaaccaca--gcttcgagtactta |
5242877 |
T |
|
| Q |
101 |
ctgatcaagaaagtgacactacatagcataatcaaccaatccaaatttgagaaaaaacaatggcatctaaacaacaaaaccgacaagagcttgaggagaa |
200 |
Q |
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| T |
5242878 |
ctgatcaagaaagtgacactacatagcataatcaaccaatccaaatttgagaaaaaacaatggcatctaaacaacaaaaccgacaagagcttgaggagaa |
5242977 |
T |
|
| Q |
201 |
ggcaaagcaaggagagactgttgttcctggtggcactggtggcaagagccttgaggctcaggaacatcttgctgaaggttatacattagtttatgattaa |
300 |
Q |
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| T |
5242978 |
ggcaaagcaaggagagactgttgttcctggtggcactggtggcaagagccttgaggctcaggaacatcttgctgaaggttatacattagtttatgattaa |
5243077 |
T |
|
| Q |
301 |
tgcatattattatatacttaaaatttgatactaatttttgatgtttaattaaaggaaggagcaagggagggcagacaaggaaggagcaactagggacaga |
400 |
Q |
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| T |
5243078 |
tgcatattattatatacttaaaatttgatactaatttttggtgtttaattaaaggaaggagcaagggagggcagacaaggaaggagcaactagggacaga |
5243177 |
T |
|
| Q |
401 |
agggtatcaggagatgggacgtaaaggaggactgagcactatggagaagtcaggaggagaacgtgctgaagaggaaggtattgatattgatgagtccaag |
500 |
Q |
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| T |
5243178 |
agggtatcaggagatgggacgtaaaggaggactgagcactatggagaagtcaggaggagaacgtgctgaagaggaaggtattgatattgatgagtccaag |
5243277 |
T |
|
| Q |
501 |
ttcaagac |
508 |
Q |
| |
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|||||||| |
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| T |
5243278 |
ttcaagac |
5243285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 366 - 502
Target Start/End: Complemental strand, 25523121 - 25522985
Alignment:
| Q |
366 |
ggagggcagacaaggaaggagcaactagggacagaagggtatcaggagatgggacgtaaaggaggactgagcactatggagaagtcaggaggagaacgtg |
465 |
Q |
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||||||||||||||||| ||||| | |||| |||||||||||| || ||||| |||||||||||||| || |||||||| ||||| || | | |||||| |
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| T |
25523121 |
ggagggcagacaaggaaagagcagatggggagagaagggtatcaagaaatgggccgtaaaggaggactcagtactatggataagtctggtgaacaacgtg |
25523022 |
T |
|
| Q |
466 |
ctgaagaggaaggtattgatattgatgagtccaagtt |
502 |
Q |
| |
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| T |
25523021 |
ctgctgaggaaggaatagacattgatgaatccaagtt |
25522985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 278
Target Start/End: Complemental strand, 25523391 - 25523273
Alignment:
| Q |
160 |
atggcatctaaacaacaaaaccgacaagagcttgaggagaaggcaaagcaaggagagactgttgttcctggtggcactggtggcaagagccttgaggctc |
259 |
Q |
| |
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||||| ||| ||||||||||||| |||| |||||||||| ||||| || || || |||||| ||||||||||||| ||||| ||||| ||||| |||| |
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| T |
25523391 |
atggcgtctcaacaacaaaaccgtgaagaacttgaggagagggcaaggcttggtgaaactgttattcctggtggcacaggtggaaagagtcttgaagctc |
25523292 |
T |
|
| Q |
260 |
aggaacatcttgctgaagg |
278 |
Q |
| |
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| |||| ||||||||||| |
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| T |
25523291 |
aacaacaccttgctgaagg |
25523273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 25523181 - 25523128
Alignment:
| Q |
366 |
ggagggcagacaaggaaggagcaactagggacagaagggtatcaggagatggga |
419 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||||||| ||||| ||||||||| |
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| T |
25523181 |
ggagggcagacaaggaagcagcagttagggtcagaaggatatcaagagatggga |
25523128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 2954117 - 2954053
Alignment:
| Q |
160 |
atggcatctaaacaacaaaaccgacaagagcttgaggagaaggcaaagcaaggagagactgttgt |
224 |
Q |
| |
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||||||||| |||||||||| |||||||||||||||| ||||||||| | |||||| ||||||| |
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| T |
2954117 |
atggcatctcaacaacaaaagtgacaagagcttgaggaaaaggcaaaggagggagagcctgttgt |
2954053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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