View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_low_15 (Length: 464)
Name: NF6533_low_15
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 10 - 447
Target Start/End: Original strand, 11747787 - 11748224
Alignment:
| Q |
10 |
aagaaaataaatgtcttgagcttaactcatttatttgaacgagcttaacttaaattatgctttgacttgtttaaaactaggaaaacatggacttcatttg |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11747787 |
aagaaaataaatgtcttgagcttaactcatttatttgaacgagcttaacttaaagtatgctttgacttgtttaaaactagtaaaacatggacttcatttg |
11747886 |
T |
|
| Q |
110 |
ttaaccttatatacatgttgannnnnnnncacaatatacatagtttgctcttaaataaaatcaattaattgaatctttatacttttgtgtaggcagtgga |
209 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11747887 |
ttaaccttatatacatgttgattttttttcacaatatacatagtttgctcttaaataaaatcaattaattgaatctttatacttttgtgtaggcagtgga |
11747986 |
T |
|
| Q |
210 |
gaaaattgtgcatcccaagtgtaaggaagcaaaaaattcagacgataagaagcctcgagaactatttacagaaagccacaaggagctggtgaaagctgga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11747987 |
gaaaattgtgcatcccaagtgtaaggaagcaaaaaattcagacgataagaagcctcgagaactatttacagaaagccacaaggagctggtgaaagctgga |
11748086 |
T |
|
| Q |
310 |
gagaaatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtggaaaca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11748087 |
gagaaatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtggaaaca |
11748186 |
T |
|
| Q |
410 |
atcaagacagtggaattcccctcttcttgcatgacaat |
447 |
Q |
| |
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|
| T |
11748187 |
atcaagacagtggaattcccctcttcttgcatgacaat |
11748224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 193 - 445
Target Start/End: Complemental strand, 11882596 - 11882344
Alignment:
| Q |
193 |
tttgtgtaggcagtggagaaaattgtgcatcccaagtgtaaggaagcaaaaaattcagacgataagaagcctcgagaactatttacagaaagccacaagg |
292 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||||||||||||||||| || |||||||||||| ||||||||| |
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|
| T |
11882596 |
tttgtgtaggcagtggaggaaattgtgcaccccaagtgtaaggaagcaaaaaatgctgacgataagaagcctcgtgagctatttacagaaggccacaagg |
11882497 |
T |
|
| Q |
293 |
agctggtgaaagctggagagaaatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcac |
392 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
11882496 |
agctggtgaaagccggagagaaatgggcaaaagatacagctggttcatttactcttgttgctacactcatcacaaccatcatgtttgctgcagctttcac |
11882397 |
T |
|
| Q |
393 |
tgtccctggtggaaacaatcaagacagtggaattcccctcttcttgcatgaca |
445 |
Q |
| |
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|||||||||||||||||||||||||| |||| ||||| | |||||||| |||| |
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|
| T |
11882396 |
tgtccctggtggaaacaatcaagacaatggagttcccttgttcttgcacgaca |
11882344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 204 - 438
Target Start/End: Complemental strand, 11834973 - 11834739
Alignment:
| Q |
204 |
agtggagaaaattgtgcatcccaagtgtaaggaagcaaaaaattcagacgataagaagcctcgagaactatttacagaaagccacaaggagctggtgaaa |
303 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| ||||| ||| ||||||||||| || || ||||||||||||| ||||||||||| |||||| |
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|
| T |
11834973 |
agtggagaaaatcgtgcaccccaagtgtaaggaagccaaaaacgtagaagataagaagccccgtgagatatttacagaaagtcacaaggagctagtgaaa |
11834874 |
T |
|
| Q |
304 |
gctggagagaaatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtg |
403 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11834873 |
gctggagaaaaatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgtttgctgcagctttcactgtccctggtg |
11834774 |
T |
|
| Q |
404 |
gaaacaatcaagacagtggaattcccctcttcttg |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
11834773 |
gaaacaatcaagacagtggaattcccctcttcttg |
11834739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 204 - 444
Target Start/End: Complemental strand, 11790756 - 11790516
Alignment:
| Q |
204 |
agtggagaaaattgtgcatcccaagtgtaaggaagcaaaaaattcagacgataagaagcctcgagaactatttacagaaagccacaaggagctggtgaaa |
303 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||| || ||||||||||||||||||||||||| |||||| |
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|
| T |
11790756 |
agtggagaaaattgtgcaccccaaatgtaaggaagccaaaaattcagaagataagaagcctcatgagatatttacagaaagccacaaggagctagtgaaa |
11790657 |
T |
|
| Q |
304 |
gctggagagaaatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtg |
403 |
Q |
| |
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|| || || |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11790656 |
gccggtgaaaaatgggcaaaagaaacagcaggttcatttacacttgttgctactctcatcacaaccatcatgtttgctgcagctttcactgtccctggtg |
11790557 |
T |
|
| Q |
404 |
gaaacaatcaagacagtggaattcccctcttcttgcatgac |
444 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| |||||| |
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|
| T |
11790556 |
gaaacaatcaagacagtggaattcccttgttcttacatgac |
11790516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 315 - 437
Target Start/End: Complemental strand, 11754504 - 11754382
Alignment:
| Q |
315 |
atgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtggaaacaatcaa |
414 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
11754504 |
atgggcaaaagagacagcagaatcatttacacttgtggctacacttatcacaaccatcatgtttgctgcagctttcactgtccctggtggaaacaatcaa |
11754405 |
T |
|
| Q |
415 |
gacagtggaattcccctcttctt |
437 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
11754404 |
gacagtggaattcccctcttctt |
11754382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 205 - 440
Target Start/End: Complemental strand, 11751503 - 11751279
Alignment:
| Q |
205 |
gtggagaaaattgtgcatcccaagtgtaaggaagcaaaaaattcagacgataagaagcctcgagaactatttacagaaagccacaaggagctggtgaaag |
304 |
Q |
| |
|
||||||||||||||||| || ||| |||||||||| ||||| ||| || || |||||||| || ||||||| |||||||||| |||||| | ||||| |
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|
| T |
11751503 |
gtggagaaaattgtgcaccctaagcgtaaggaagccaaaaacgtagaagagaaaaagcctcgtgagatatttaccgaaagccacagggagctagcgaaag |
11751404 |
T |
|
| Q |
305 |
ctggag-agaaatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtg |
403 |
Q |
| |
|
| || | | |||||||||||||| |||||||||| |||| || |||||||| || |||||||| |||||||||||||| |||||||||| |
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|
| T |
11751403 |
cagggggaaaaatgggcaaaaga------------atttacacttattgcaactctcatcactactatcatgtttgctgcagctttcacagtccctggtg |
11751316 |
T |
|
| Q |
404 |
gaaacaatcaagacagtggaattcccctcttcttgca |
440 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||| |
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|
| T |
11751315 |
gaaaaaatcaagacagtggaattcctatcttcttgca |
11751279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 280 - 407
Target Start/End: Complemental strand, 12008795 - 12008668
Alignment:
| Q |
280 |
gaaagccacaaggagctggtgaaagctggagagaaatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcg |
379 |
Q |
| |
|
||||||||| ||||||| ||||||| |||||||||||||||||||| ||||| || | |||| |||| | ||||||||||| ||||||||||| | |
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|
| T |
12008795 |
gaaagccacgaggagctagtgaaagaaggagagaaatgggcaaaagacacagcaacatcttatacaattgtgggaacactcatcactaccatcatgtttg |
12008696 |
T |
|
| Q |
380 |
ctgcagctttcactgtccctggtggaaa |
407 |
Q |
| |
|
||||||| || || ||||| |||||||| |
|
|
| T |
12008695 |
ctgcagcctttacggtcccaggtggaaa |
12008668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 12090959 - 12090906
Alignment:
| Q |
280 |
gaaagccacaaggagctggtgaaagctggagagaaatgggcaaaagatacagct |
333 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
12090959 |
gaaagccatgaggagctagtgaaagctggagaaaaatggacaaaagacacagct |
12090906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 413
Target Start/End: Original strand, 6106081 - 6106180
Alignment:
| Q |
314 |
aatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtggaaacaatca |
413 |
Q |
| |
|
||||||||||||||| ||| |||| || ||| |||| | ||| ||||||| ||||||||||| ||||||||||||||||| || || ||||||||||| |
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|
| T |
6106081 |
aatgggcaaaagatatagcaagttctttcacaattgtgggtactctcatcattaccatcatgtttgctgcagctttcactgttccaggaggaaacaatca |
6106180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 414
Target Start/End: Complemental strand, 6129822 - 6129722
Alignment:
| Q |
314 |
aatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtggaaacaatca |
413 |
Q |
| |
|
||||||||||||||||||| |||| || ||| |||||| ||| || |||| ||||||||||| || || ||||||||||| || || ||||||||||| |
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|
| T |
6129822 |
aatgggcaaaagatacagcaagttctttcacaattgttggtactctaatcattaccatcatgtttgccgctgctttcactgttccaggaggaaacaatca |
6129723 |
T |
|
| Q |
414 |
a |
414 |
Q |
| |
|
| |
|
|
| T |
6129722 |
a |
6129722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 416
Target Start/End: Complemental strand, 6858690 - 6858641
Alignment:
| Q |
367 |
accatcatgttcgctgcagctttcactgtccctggtggaaacaatcaaga |
416 |
Q |
| |
|
||||||||||| ||||||||||||||||| || || |||||||||||||| |
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|
| T |
6858690 |
accatcatgtttgctgcagctttcactgttccaggaggaaacaatcaaga |
6858641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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