View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_low_16 (Length: 462)
Name: NF6533_low_16
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 39017966 - 39018108
Alignment:
| Q |
1 |
tacaaatcatattatattattcatgtgatgtattgatgcatctgaattaaattaaagtaaatctttgttgtcttatactactttgtattctactgcaaaa |
100 |
Q |
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| T |
39017966 |
tacaaatcatattatattattcatgtgatgtattgatgcatctgaattaaattaaagtaaatctttgttgtctta---tactttgtattctactgcaaaa |
39018062 |
T |
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| Q |
101 |
ggataaatattatcttcataaattgattgctttttaaatccgtttt |
146 |
Q |
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| T |
39018063 |
ggataaatattatcttcataaattgattgctttttaaatccgtttt |
39018108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 217 - 325
Target Start/End: Original strand, 39018182 - 39018290
Alignment:
| Q |
217 |
catcacttgcatcttcattaatgtattatagtacaagacaactatatacaaaaggcaaaaacaattataccagcaaatccacatcaattaatgaagtata |
316 |
Q |
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| T |
39018182 |
catcacttgcatcttcattaatgtattatagtacaagacaactatatacaaaaggcaaaaacaattataccagcaaatccacatcaattaatgaagtata |
39018281 |
T |
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| Q |
317 |
tctaataga |
325 |
Q |
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||||||||| |
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| T |
39018282 |
tctaataga |
39018290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 353 - 440
Target Start/End: Original strand, 39018318 - 39018405
Alignment:
| Q |
353 |
cttattcataaatgcattacacatctgaatgcataatgatcccttcctctttcctttccatccctttctatttttcttgtattctcat |
440 |
Q |
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| T |
39018318 |
cttattcataaatgcattacacatctgaatgcataatgatcccttcctcttacctttccatccctttctatttttcttgtattctcat |
39018405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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