View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_low_17 (Length: 458)
Name: NF6533_low_17
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 52036001 - 52035632
Alignment:
| Q |
1 |
ggcatcccctgttcccacagaaaacggttaaataatggttaatgtaatctattgagtggtttatcaattccatcctcttacatttttcattcattctttt |
100 |
Q |
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| T |
52036001 |
ggcatcccctgttcccacagaaaacggttaaat---ggttaatgtaatctattgagtggtttatcaattccatcctcttacatttttcattcattctttt |
52035905 |
T |
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| Q |
101 |
catcaattatccaaacaacttgcaagaacacctatnnnnnnntgtcaattacttcgaattattttgttgacaaatactaatattgtagaagcttcacaga |
200 |
Q |
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| T |
52035904 |
catcaattatccaaacaacttgcaagaacacgtataaaaaa-tatcaattacttcgaattattttgtttacaaatactaatattgtagaagcttcacaga |
52035806 |
T |
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| Q |
201 |
taataagttctctcccgacaatgtatatcatagctcatacggcaagttgagtcgagttaaaaatgacatgagatgcttttgatcacaatattgacaaaac |
300 |
Q |
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| T |
52035805 |
taataagttctctcccgacaatgtatatcatcgctcatacggcaagttgagtcgagttaaaaatgacatgagatgcttttgatcacaatattgacaaaac |
52035706 |
T |
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| Q |
301 |
gatgcaatgagtgtgtattaaattttagctactttatttatttcattctctaaaaaatgacacttttttaaaaa |
374 |
Q |
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| T |
52035705 |
gatgcaatgagtgtgtattaaattttagctactttatttatttcattctctaaaaaatgacacttttgtaaaaa |
52035632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 404 - 451
Target Start/End: Complemental strand, 52035641 - 52035594
Alignment:
| Q |
404 |
tttgtaaaaattgaatgaaagattgtgaaagaaaaagcatattcttcg |
451 |
Q |
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| T |
52035641 |
tttgtaaaaattgaatgaaagattgtgaaagaaaaagcatattattcg |
52035594 |
T |
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