View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_low_19 (Length: 452)
Name: NF6533_low_19
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_19 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 129 - 452
Target Start/End: Original strand, 48656648 - 48656970
Alignment:
| Q |
129 |
gaagctataaattgaatttggcagtagcagtaccattaatactagtagtagaagttgaagaaggttagattttgaggtaagttttgaaaagtagttggaa |
228 |
Q |
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| T |
48656648 |
gaagctataaattgaatttggcagtagcagtaccattaatactagtagtagaagttgaagaaggttagattttgaggtaagttttgaaaagtagttggaa |
48656747 |
T |
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| Q |
229 |
gccaacggtctttctttgtttgtcctctctgcaaatctaatgttggaaggtgcggcgccaataaaaattgagacatttgcattttgcattgaaaatggaa |
328 |
Q |
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| T |
48656748 |
gccaacggtctttctttgtttgtcctctctgcaaatctaatgttggaaggtgcggtgccaataaaaattgagacatttgcattttgcattgaaaatggaa |
48656847 |
T |
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| Q |
329 |
atggtaatgtatacaaccacnnnnnnnntctaatcttggaaggtgtagctagtgaatgatgagtgagtgaaagtgatcgttccttcattttatgtattct |
428 |
Q |
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| T |
48656848 |
atggtaatgtatacaaccac-aaaaaaatctaatgttggaaggtgtagctagtgagtgatgagtgagtgagagtgatcgttccttcattttatgtattct |
48656946 |
T |
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| Q |
429 |
aacaaacagtcaactggtattata |
452 |
Q |
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| T |
48656947 |
aacaaacagtcaactggtattata |
48656970 |
T |
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