View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6533_low_20 (Length: 410)

Name: NF6533_low_20
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6533_low_20
NF6533_low_20
[»] chr5 (10 HSPs)
chr5 (23-396)||(19215387-19215760)
chr5 (31-229)||(788030-788226)
chr5 (31-238)||(32278459-32278667)
chr5 (283-394)||(36868299-36868410)
chr5 (23-242)||(1442697-1442915)
chr5 (33-163)||(36868506-36868635)
chr5 (140-327)||(37307058-37307247)
chr5 (285-357)||(32278710-32278782)
chr5 (171-253)||(35811278-35811358)
chr5 (33-75)||(15188268-15188310)
[»] chr3 (8 HSPs)
chr3 (23-394)||(35526303-35526674)
chr3 (26-394)||(29346805-29347174)
chr3 (283-390)||(16893088-16893195)
chr3 (283-394)||(51524874-51524985)
chr3 (23-75)||(18028331-18028383)
chr3 (33-75)||(51525158-51525200)
chr3 (37-72)||(18460761-18460796)
chr3 (283-394)||(26796822-26796933)
[»] chr7 (4 HSPs)
chr7 (26-259)||(7543850-7544081)
chr7 (23-220)||(19407635-19407831)
chr7 (283-394)||(19407845-19407956)
chr7 (310-396)||(33191283-33191369)
[»] chr1 (13 HSPs)
chr1 (31-394)||(13061714-13062075)
chr1 (283-394)||(3374310-3374421)
chr1 (283-392)||(49491882-49491990)
chr1 (23-127)||(44163502-44163605)
chr1 (287-394)||(19394133-19394240)
chr1 (283-394)||(17114717-17114827)
chr1 (283-392)||(50903484-50903593)
chr1 (23-163)||(41034786-41034925)
chr1 (287-358)||(39332377-39332448)
chr1 (283-394)||(41035027-41035138)
chr1 (23-72)||(3374577-3374626)
chr1 (26-126)||(9094311-9094410)
chr1 (33-75)||(39332627-39332669)
[»] chr8 (11 HSPs)
chr8 (23-215)||(3801152-3801344)
chr8 (169-394)||(29369110-29369336)
chr8 (23-138)||(29369340-29369455)
chr8 (283-394)||(27786789-27786900)
chr8 (33-75)||(399521-399563)
chr8 (332-394)||(8831273-8831335)
chr8 (23-69)||(14295245-14295291)
chr8 (23-72)||(3072281-3072330)
chr8 (23-72)||(27786554-27786603)
chr8 (23-72)||(8831017-8831066)
chr8 (33-74)||(36206257-36206298)
[»] chr4 (9 HSPs)
chr4 (23-394)||(37050007-37050380)
chr4 (23-138)||(7492263-7492378)
chr4 (23-252)||(18522040-18522269)
chr4 (145-393)||(24239705-24239955)
chr4 (23-138)||(7500314-7500429)
chr4 (223-390)||(16832081-16832249)
chr4 (169-242)||(7492186-7492259)
chr4 (169-242)||(7500237-7500310)
chr4 (23-75)||(19852785-19852836)
[»] chr6 (5 HSPs)
chr6 (24-394)||(25167850-25168221)
chr6 (23-394)||(3949341-3949714)
chr6 (283-393)||(4263371-4263481)
chr6 (122-188)||(5605509-5605576)
chr6 (23-75)||(10990316-10990368)
[»] chr2 (10 HSPs)
chr2 (169-394)||(31092323-31092549)
chr2 (23-130)||(31092561-31092668)
chr2 (283-394)||(14296260-14296371)
chr2 (283-394)||(18811707-18811818)
chr2 (23-75)||(18811481-18811533)
chr2 (283-392)||(8413819-8413928)
chr2 (281-394)||(37344626-37344739)
chr2 (23-156)||(30180038-30180171)
chr2 (23-75)||(13502884-13502936)
chr2 (39-75)||(33898400-33898436)
[»] scaffold0531 (2 HSPs)
scaffold0531 (283-394)||(10266-10377)
scaffold0531 (23-75)||(10560-10611)


Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 23 - 396
Target Start/End: Complemental strand, 19215760 - 19215387
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatg 122  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  19215760 atcaaagtaataaaatataaaagataggagaggcctgaaccaatacaacagagatgcatagactaaaacctatgaaaagagaaactagatctattccaag 19215661  T
Q  123 aaaggaaaggacctaatgaaataggtgtcaaagacaaccattatacagaaaactagtcaaattatgtccgttcttggccaaacaacagctaaatgactgc 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  19215660 aaaggaaaggacctaatgaaataggtgtcaaagacaaccattatacagaaaactagtcaaattatgtctgttcttggccaaacaacagctaaaagactgc 19215561  T
Q  223 cctctctatgaaaatttgaatagaagtattgacattcctagaaattctatacaactcgatcaactattctgtatctgccaaggcagctttgaaggtacca 322  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||| ||||||||||||     
T  19215560 cctctctgtgaaaatttgaatagaagtattgacattcctagaaattctatgcaattcgaccaactattctgtatctgccaaggcagttttgaaggtaccc 19215461  T
Q  323 ttttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcacatgcttcttcttcat 396  Q
    |||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  19215460 ttttgggctcgggtcctcattcgggctgagttaaagctagacggcatcactttgttcacctgcttcttcttcat 19215387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 31 - 229
Target Start/End: Original strand, 788030 - 788226
Alignment:
Q  31 aataaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatgaaaggaaa 130  Q
    |||||||||||||||||| |||| ||||||||||||||||||  |  ||||||  ||||| ||||  ||||||||| |  |||||||||| |||||||||    
T  788030 aataaaatataaaagacaggagaagcctgaaccaatacaacatggtcgcatagtgtaaaatctataaaaagagaaaatgaatctattccaagaaaggaaa 788129  T
Q  131 ggacctaatgaaataggtgtcaaagacaaccattatacagaaaactagtcaaattatgtccgttcttggccaaacaacagctaaatgactgccctctct 229  Q
    |  | ||| |||| |||||||||||||||||||| |  | |||||||| ||||||||| || ||| ||||||||| ||||||||| |||| ||||||||    
T  788130 gaccttaaggaaagaggtgtcaaagacaaccattgt--aaaaaactagacaaattatgaccattcatggccaaaccacagctaaaagactaccctctct 788226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 238
Target Start/End: Original strand, 32278459 - 32278667
Alignment:
Q  31 aataaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatgaaaggaaa 130  Q
    ||||||||||||||| ||  ||||||||||||||||||| |||||   |||||  ||||||||||| ||||||||||  ||||||| ||| |||| | ||    
T  32278459 aataaaatataaaag-cagaagaggcctgaaccaatacatcagagtcacatagtgtaaaacctatgaaaagagaaaccggatctatcccaagaaaaggaa 32278557  T
Q  131 ggacctaatgaaataggtgtcaaagacaaccattatacag-aaaactagtc-aaattatgtccgttcttggccaaacaacagctaaatgactgccctctc 228  Q
     | ||||| |||  |||||||||||||||||| |  |||| |||||||||| ||| |||| || ||||||||||||||||  ||||| |||| | |||||    
T  32278558 tgtcctaaggaacgaggtgtcaaagacaaccaatgaacagaaaaactagtcaaaagtatgaccattcttggccaaacaacgactaaaagactactctctc 32278657  T
Q  229 tatgaaaatt 238  Q
    || |||||||    
T  32278658 taagaaaatt 32278667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 283 - 394
Target Start/End: Complemental strand, 36868410 - 36868299
Alignment:
Q  283 caactattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcaca 382  Q
    |||||||| |||||||| ||||| ||||||| ||| ||| ||||||   |||| |||||||| ||||||||||||| |||| ||| ||||||| |||||     
T  36868410 caactattatgtatctgtcaaggtagctttggaggaacccttttggacacgggccctcattccggctgagttaaagctagaaggcttcactttattcact 36868311  T
Q  383 tgcttcttcttc 394  Q
    ||||||||||||    
T  36868310 tgcttcttcttc 36868299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 1442697 - 1442915
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatg 122  Q
    ||||||| ||||||||||||||| || ||||||| |||||||||||| |||||   ||||   |||||| || | |||||||||| |||||||| ||| |    
T  1442697 atcaaagcaataaaatataaaag-caggagaggcatgaaccaatacatcagagtcacatattgtaaaacataagaaaagagaaaccagatctatcccaag 1442795  T
Q  123 aaaggaaaggacctaatgaaataggtgtcaaagacaaccattatacagaaaactag-tcaaattatgtccgttcttggccaaacaacagctaaatgactg 221  Q
    ||||| || | |||| ||||  ||||||||||||||||||   |||| |||||||| | |||| ||| ||  ||||| | |||||||  ||||| ||||     
T  1442796 aaagggaatgtcctactgaacaaggtgtcaaagacaaccaaagtaca-aaaactagttaaaataatgaccaatcttgacaaaacaacgactaaaagacta 1442894  T
Q  222 ccctctctatgaaaatttgaa 242  Q
    | ||||||| |||||||||||    
T  1442895 ctctctctaagaaaatttgaa 1442915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 163
Target Start/End: Complemental strand, 36868635 - 36868506
Alignment:
Q  33 taaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatgaaaggaaagg 132  Q
    |||||||||||||| | ||||||||||||||||||||||| ||   ||  |  ||| ||||||| ||||| |||   ||||||| ||| ||||||||| |    
T  36868635 taaaatataaaagataggagaggcctgaaccaatacaacacagtcacaatgtgtaagacctatgaaaagaaaaatcggatctatcccaagaaaggaaaag 36868536  T
Q  133 acctaatgaaataggtgtcaaagacaaccat 163  Q
    |||||| |||| ||||||||||||| |||||    
T  36868535 acctaa-gaaaaaggtgtcaaagaccaccat 36868506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 327
Target Start/End: Original strand, 37307058 - 37307247
Alignment:
Q  140 gaaataggtgtcaaagacaaccattatacagaaaac-tagtcaaattatgtccgttcttggccaaacaacagctaaatgactgccctctctatgaaaatt 238  Q
    |||| ||||||||||||| | |||| |||| ||||| |||||| || |||  | || ||||||||||||| |||| | |||| | |||||| ||||||||    
T  37307058 gaaagaggtgtcaaagaccatcattgtacataaaacctagtcatataatgagcatttttggccaaacaactgctacaagactacactctctgtgaaaatt 37307157  T
Q  239 tgaatagaagtattgacattcctagaaattc-tatacaactcgatcaactattctgtatctgccaaggcagctttgaaggtaccattttg 327  Q
    |||| | ||||||||| ||| | ||  |||| | |  || |  | |||||||| ||||||||||||| ||||||| |||||||| |||||    
T  37307158 tgaacaaaagtattgatatttccagttattcttttgtaattgaaccaactattatgtatctgccaagacagctttaaaggtacccttttg 37307247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 357
Target Start/End: Original strand, 32278710 - 32278782
Alignment:
Q  285 actattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaa 357  Q
    ||||||||||||||| |||||| |||||| ||||||| |||||||  ||  || |||||| ||||||||||||    
T  32278710 actattctgtatctgtcaaggcggctttggaggtacccttttgggaacgaatcttcattccggctgagttaaa 32278782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 35811358 - 35811278
Alignment:
Q  171 aaaactagtcaaattatgtccgttcttggccaaacaacagctaaatgactgccctctctatgaaaatttgaatagaagtattg 253  Q
    ||||||||||||||||||    ||||||| |||||||| |||||| |||| ||||||  ||||||||||||| | ||||||||    
T  35811358 aaaactagtcaaattatgattattcttggtcaaacaacggctaaaagactaccctct--atgaaaatttgaacaaaagtattg 35811278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 15188310 - 15188268
Alignment:
Q  33 taaaatataaaagacatgagaggcctgaaccaatacaacagag 75  Q
    |||||||||||||||| |||| |||||||| ||||||||||||    
T  15188310 taaaatataaaagacaagagatgcctgaacgaatacaacagag 15188268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 23 - 394
Target Start/End: Original strand, 35526303 - 35526674
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatg 122  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||| |||||| |||||| |||||| |||| |||||||||| ||| |||||||| |    
T  35526303 atcaaagcaataaaatataaaagaca-gagaggcctgaaccaatacaatagagatacatagagtaaaacttatgaaaagagaaaccagagctattccaag 35526401  T
Q  123 aaaggaaaggacctaatgaaataggtgtcaaagacaaccattatacagaaaactagtcaaattatgtccgttcttggccaaacaacagctaaatgactgc 222  Q
    |||||||| | |||||||||| |||||||||| ||||||||| |||| |||||||||||||||||| || |  |||||| ||||| ||||||| || |||    
T  35526402 aaaggaaatggcctaatgaaacaggtgtcaaaaacaaccattgtacataaaactagtcaaattatgaccatgtttggcccaacaatagctaaaagattgc 35526501  T
Q  223 cctctctatgaaaatttgaatagaagtattgacattcctagaaattcta-tacaactcgatcaactattctgtatctgccaaggcagctttgaaggtacc 321  Q
     ||||||||||||||||||| | ||||||| ||||||| ||| |||||| | ||| |  | ||| |||| || |||||||||| |  |||||  ||||||    
T  35526502 actctctatgaaaatttgaacaaaagtattaacattcccagatattctattgcaattgcaccaattattttgaatctgccaagacgtctttgttggtacc 35526601  T
Q  322 attttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcacatgcttcttcttc 394  Q
     |||||||  ||||||||||||| ||| ||||||||| |||| ||||||||||||||||| ||||||||||||    
T  35526602 cttttgggcacgggtcctcattccggccgagttaaagctagaaggcatcactttgttcacctgcttcttcttc 35526674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 26 - 394
Target Start/End: Complemental strand, 29347174 - 29346805
Alignment:
Q  26 aaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatgaaa 125  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||  | ||||| ||| ||||    
T  29347174 aaagcaataaaatataaaagacaggagaggcctgaaccaatacaacagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaa 29347075  T
Q  126 ggaaaggacctaatgaaataggtgtcaaagacaaccattatacagaaaactagtcaaattatgtccgttcttggccaaacaacagctaaatgactgccct 225  Q
     |||| | |||||||||| |||||||||| |||||||||  ||| ||||||||||||| |||| || |||  |||||||||||| ||||| |||||||||    
T  29347074 agaaaaggcctaatgaaagaggtgtcaaatacaaccattgaacataaaactagtcaaactatgaccattccaggccaaacaacaactaaaagactgccct 29346975  T
Q  226 ctctatgaaaatttgaatagaagtattgacattcctagaaattct-atacaactcgatcaactattctgtatctgccaaggcagctttgaaggtaccatt 324  Q
    |||||||||||||| || | ||||||||||||||  |   || ||  | ||| | || |||||||| |||||||| |||||| |||||| ||||||  ||    
T  29346974 ctctatgaaaattttaacaaaagtattgacattctcatctatactcttgcaattggaccaactattatgtatctgtcaaggcggctttggaggtactctt 29346875  T
Q  325 ttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcacatgcttcttcttc 394  Q
    ||| |  ||||||||||||| |||| |||||||| || | |||||||| |||||||| ||||||||||||    
T  29346874 ttgtgcacgggtcctcattccggctaagttaaagctataaggcatcacgttgttcacctgcttcttcttc 29346805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 390
Target Start/End: Complemental strand, 16893195 - 16893088
Alignment:
Q  283 caactattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcaca 382  Q
    ||||||||| |||| || ||||||||||||| ||| ||| ||||| |  ||||||||||||| ||||||||| ||  |||  ||| |||||||||||||     
T  16893195 caactattcggtatatggcaaggcagctttggaggcacccttttgagcacgggtcctcattccggctgagttgaacctagtaggcttcactttgttcacc 16893096  T
Q  383 tgcttctt 390  Q
    ||||||||    
T  16893095 tgcttctt 16893088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 394
Target Start/End: Complemental strand, 51524985 - 51524874
Alignment:
Q  283 caactattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcaca 382  Q
    |||||||| || ||||| ||||| ||||||| |||  || |||||||  ||||||||||||| ||||||||||||| || | ||| ||||||| | |||     
T  51524985 caactattttgcatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacc 51524886  T
Q  383 tgcttcttcttc 394  Q
    ||||||||||||    
T  51524885 tgcttcttcttc 51524874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 18028331 - 18028383
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagag 75  Q
    ||||||| | |||||||||||||| |||||| |||||||||||||||||||||    
T  18028331 atcaaagcactaaaatataaaagatatgagatgcctgaaccaatacaacagag 18028383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 51525200 - 51525158
Alignment:
Q  33 taaaatataaaagacatgagaggcctgaaccaatacaacagag 75  Q
    |||||||||||||||| ||||||||||| ||||||||||||||    
T  51525200 taaaatataaaagacaggagaggcctgagccaatacaacagag 51525158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 18460796 - 18460761
Alignment:
Q  37 atataaaagacatgagaggcctgaaccaatacaaca 72  Q
    ||||||||||||||||||||||||||||| ||||||    
T  18460796 atataaaagacatgagaggcctgaaccaacacaaca 18460761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 394
Target Start/End: Original strand, 26796822 - 26796933
Alignment:
Q  283 caactattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcaca 382  Q
    |||||||| |||| ||| ||||||| ||||  ||| ||||||||||||  || ||||||||  | ||||||||||| | |  | | |||||||||| |||    
T  26796822 caactattatgtagctgtcaaggcaactttagaggcaccattttgggtatggttcctcatttcgactgagttaaagctggtagacttcactttgttaaca 26796921  T
Q  383 tgcttcttcttc 394  Q
    ||||||||||||    
T  26796922 tgcttcttcttc 26796933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 26 - 259
Target Start/End: Original strand, 7543850 - 7544081
Alignment:
Q  26 aaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatgaaa 125  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||  | ||||| ||| ||||    
T  7543850 aaagcaataaaatataaaagacaggagaggcctgaaccaatacaacagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaa 7543949  T
Q  126 ggaaaggacctaatgaaataggtgtcaaagacaaccattatacagaaaactagtcaaattatgtccgttcttggccaaacaacagctaaatgactgccct 225  Q
     |||||| ||||||| || |||||||||| ||| ||| |  ||||||||||||||||| |||| || |||| |||||||||||||||||| |||||||      
T  7543950 agaaagggcctaatgtaagaggtgtcaaatacagccactgaacagaaaactagtcaaactatgaccattctaggccaaacaacagctaaaagactgcc-- 7544047  T
Q  226 ctctatgaaaatttgaatagaagtattgacattc 259  Q
    ||||||||||||||||| | ||||||||||||||    
T  7544048 ctctatgaaaatttgaacaaaagtattgacattc 7544081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 19407635 - 19407831
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatg 122  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||  | | ||| | |      
T  19407635 atcaaagtaataaaatataaaagacaggagaggcctgaaccaatacaacagagatacatagtgtaaaacctatgaaaagagaaaccgggtttatccgaaa 19407734  T
Q  123 aaaggaaaggacctaatgaaataggtgtcaaagacaaccattatacagaaaactagtcaaattatgtccgttcttggccaaacaacagctaaatgact 220  Q
    |||||||||| ||| |||||| ||||||||||||||||||||  ||||||||||||| | |||| | || ||||||||||||||||||||||| ||||    
T  19407735 aaaggaaaggccctgatgaaacaggtgtcaaagacaaccattgaacagaaaactagttagatta-gaccattcttggccaaacaacagctaaaagact 19407831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 283 - 394
Target Start/End: Original strand, 19407845 - 19407956
Alignment:
Q  283 caactattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcaca 382  Q
    ||||||| |||||||||| | ||| |||||| ||||||| |||||||  ||||||||||||| ||||||||||||| |||| || ||||||||||||||     
T  19407845 caactatactgtatctgctagggcggctttggaggtacccttttgggcacgggtcctcattccggctgagttaaagctagaaggaatcactttgttcacc 19407944  T
Q  383 tgcttcttcttc 394  Q
    ||||||||||||    
T  19407945 tgcttcttcttc 19407956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 396
Target Start/End: Complemental strand, 33191369 - 33191283
Alignment:
Q  310 tttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcacatgcttcttcttcat 396  Q
    |||||||||||| || ||||  |||||||||||    |||||||||||| |||  ||| |||||||| ||||||| |||||||||||    
T  33191369 tttgaaggtacccttctgggcacgggtcctcatgtcagctgagttaaagctagcaggcttcactttgctcacatgtttcttcttcat 33191283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 31 - 394
Target Start/End: Original strand, 13061714 - 13062075
Alignment:
Q  31 aataaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatgaaaggaaa 130  Q
    ||||||||||||||||||  ||||||| |||||||||||   ||||| |||||| ||||||||||| ||||||||||    ||||| ||| |||| ||||    
T  13061714 aataaaatataaaagacagcagaggcccgaaccaataca---gagatacatagagtaaaacctatgaaaagagaaaccgagtctatcccaagaaatgaaa 13061810  T
Q  131 ggacctaatgaaataggtgtcaaagacaaccattatacagaaaactagtcaaattatgtccgttcttggccaaacaacagctaaatgactgccctctcta 230  Q
     | |||||||||| |||||||||| |||||||||  ||||||||||||||||| || | || |||| |||||||||||||||||| |||| |||||||||    
T  13061811 aggcctaatgaaagaggtgtcaaatacaaccattgaacagaaaactagtcaaactacgaccattctaggccaaacaacagctaaaagactaccctctcta 13061910  T
Q  231 tgaaaatttgaatagaagtattgacattcctagaaattc-tatacaactcgatcaactattctgtatctgccaaggcagctttgaaggtaccattttggg 329  Q
    |||||||||||| | ||||||| ||||||| |   || | | | ||| | || ||| |||||||||| || |||||| |||||| ||||||  ||||  |    
T  13061911 tgaaaatttgaacaaaagtattaacattcccatctatacttttgcaattggaccaattattctgtatttgtcaaggcggctttggaggtactcttttcag 13062010  T
Q  330 tccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcacatgcttcttcttc 394  Q
      ||||||||||||  ||||||||||||| || | ||||||||||||||||| ||||||||||||    
T  13062011 cacgggtcctcatttcggctgagttaaagctaaaaggcatcactttgttcacctgcttcttcttc 13062075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 394
Target Start/End: Complemental strand, 3374421 - 3374310
Alignment:
Q  283 caactattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcaca 382  Q
    ||||||||||||| || |||||||||||||| || |||| |||||||  |  |||||||||| ||||||||||||  ||| |||| |||||||||||||     
T  3374421 caactattctgtagcttccaaggcagctttggagctacccttttgggcacatgtcctcattccggctgagttaaatctagccggcttcactttgttcact 3374322  T
Q  383 tgcttcttcttc 394  Q
    ||||||||||||    
T  3374321 tgcttcttcttc 3374310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 392
Target Start/End: Original strand, 49491882 - 49491990
Alignment:
Q  283 caactattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcaca 382  Q
    ||||||||| ||||  ||||||||| ||||| ||||||| |||||||  ||||||||||||| ||||||||| ||| |||  ||| ||||||||||||||    
T  49491882 caactattcggtatacgccaaggcaactttggaggtacccttttgggcacgggtcctcattccggctgagttgaagctagtaggc-tcactttgttcaca 49491980  T
Q  383 tgcttcttct 392  Q
    ||||||||||    
T  49491981 tgcttcttct 49491990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 44163502 - 44163605
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatg 122  Q
    |||||| ||||||||||| |||| || ||||||||||||||||||||||||||   |||||  ||||||||||| ||||||||||  ||||||| ||| |    
T  44163502 atcaaaataataaaatattaaag-caggagaggcctgaaccaatacaacagagtcacatagtgtaaaacctatgaaaagagaaaccggatctatcccaag 44163600  T
Q  123 aaagg 127  Q
    |||||    
T  44163601 aaagg 44163605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 394
Target Start/End: Original strand, 19394133 - 19394240
Alignment:
Q  287 tattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcacatgct 386  Q
    ||||| ||| |||||||| ||  |||||||||||| |||||||  |||||||||||||  ||| ||||||||  ||| ||| |||||||| |||||||||    
T  19394133 tattccgtagctgccaagtcaattttgaaggtacccttttgggcacgggtcctcattccagctaagttaaagcaagaaggcttcactttgctcacatgct 19394232  T
Q  387 tcttcttc 394  Q
    ||||||||    
T  19394233 tcttcttc 19394240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 394
Target Start/End: Original strand, 17114717 - 17114827
Alignment:
Q  283 caactattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcaca 382  Q
    |||||||||| || |||| ||||| |||||| ||||||| ||||||    |||||||||||| ||| ||||||||| |||  ||| ||||||||||||||    
T  17114717 caactattctatagctgc-aaggccgctttggaggtacccttttggacatgggtcctcattctggcagagttaaagctagcaggcttcactttgttcaca 17114815  T
Q  383 tgcttcttcttc 394  Q
    || |||||||||    
T  17114816 tgtttcttcttc 17114827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 392
Target Start/End: Original strand, 50903484 - 50903593
Alignment:
Q  283 caactattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcaca 382  Q
    |||||| || |||| ||||||| | |||||| |||||||  ||||||  ||||||||||||  ||||||||| ||| |||  ||| |||||||||||||     
T  50903484 caactaatcggtatatgccaagtcggctttggaggtaccgctttgggcacgggtcctcatttcggctgagttgaagctagtaggcttcactttgttcacc 50903583  T
Q  383 tgcttcttct 392  Q
    ||||||||||    
T  50903584 tgcttcttct 50903593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 163
Target Start/End: Original strand, 41034786 - 41034925
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatg 122  Q
    ||||||| | |||||||||||||||| |||||| ||||||||||||| |||||   ||  |   |||||||||| ||||| ||||  |||||||  || |    
T  41034786 atcaaagcactaaaatataaaagacaggagaggtctgaaccaatacaccagagtcacaatgtgaaaaacctatgaaaagaaaaacccgatctatcacaag 41034885  T
Q  123 aaaggaaaggacctaatgaaataggtgtcaaagacaaccat 163  Q
    |||||||| |||| || |||| ||||||||||||| |||||    
T  41034886 aaaggaaaagacccaaggaaa-aggtgtcaaagaccaccat 41034925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 39332448 - 39332377
Alignment:
Q  287 tattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaag 358  Q
    ||||||||| |||||||| ||  |||||||||||| |||||||  ||||||||||||  |||||||||||||    
T  39332448 tattctgtagctgccaagtcatttttgaaggtacccttttgggcacgggtcctcatttcggctgagttaaag 39332377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 394
Target Start/End: Original strand, 41035027 - 41035138
Alignment:
Q  283 caactattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcaca 382  Q
    ||||||||| | || |||||||| ||||||| |||  || |||||||  ||||||||||||| ||||||||||||| |||| ||| |||   | |||||     
T  41035027 caactattcagaatttgccaaggtagctttggaggagcctttttgggcacgggtcctcattccggctgagttaaagctagaaggcttcaaaatattcacc 41035126  T
Q  383 tgcttcttcttc 394  Q
    ||||||||||||    
T  41035127 tgcttcttcttc 41035138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 3374626 - 3374577
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaaca 72  Q
    ||||||| | ||||||||||||||||| ||| ||||||||||||||||||    
T  3374626 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaaca 3374577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 9094311 - 9094410
Alignment:
Q  26 aaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatgaaa 125  Q
    |||| |||||||||||||||  | ||||||| | |||| ||||| ||||| | |||||  ||||||||||| |||||||||  |||||||||||| ||||    
T  9094311 aaagcaataaaatataaaagt-aggagaggcttaaacccatacatcagagttacatagtgtaaaacctatgaaaagagaaataagatctattccaagaaa 9094409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 39332669 - 39332627
Alignment:
Q  33 taaaatataaaagacatgagaggcctgaaccaatacaacagag 75  Q
    |||||||||||||||| |||| ||||||| |||||||||||||    
T  39332669 taaaatataaaagacaggagatgcctgaatcaatacaacagag 39332627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 3e-52; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 23 - 215
Target Start/End: Complemental strand, 3801344 - 3801152
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatg 122  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| ||| || ||||||||||| ||||||||||  ||||||| | | |    
T  3801344 atcaaagtaataaaatataaaagacaggagaggtctgaaccaatacatcagagatacatggaataaaacctatgaaaagagaaaccggatctatcctaag 3801245  T
Q  123 aaaggaaaggacctaatgaaataggtgtcaaagacaaccattatacagaaaactagtcaaattatgtccgttcttggccaaacaacagctaaa 215  Q
    ||||| |||||||||| |||| ||||||||||||||||| |  |||| |||||| ||||||||||| || |||||||||||||||||||||||    
T  3801244 aaaggcaaggacctaaggaaagaggtgtcaaagacaaccgtattacataaaactggtcaaattatgaccattcttggccaaacaacagctaaa 3801152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 169 - 394
Target Start/End: Complemental strand, 29369336 - 29369110
Alignment:
Q  169 agaaaactagtcaaattatgtccgttcttggccaaacaacagctaaatgactgccctctctatgaaaatttgaatagaagtattgacattcctagaaatt 268  Q
    |||||||||||||||||||  || | |||  |||||||| ||||||| |||| ||||||||||||||||||||| | ||| ||||||||||   || |||    
T  29369336 agaaaactagtcaaattataaccatacttaaccaaacaatagctaaaagactaccctctctatgaaaatttgaacaaaagcattgacattctcggatatt 29369237  T
Q  269 cta-tacaactcgatcaactattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaaggtagacggc 367  Q
    ||| | ||| | || |||||||||||||||||||||||| | |||| | ||| | |||||||  ||||||||||||| |||| |||||||| | || |||    
T  29369236 ctaatgcaattggaccaactattctgtatctgccaaggcggatttggatgtatccttttgggcacgggtcctcattctggctcagttaaagcttgaaggc 29369137  T
Q  368 atcactttgttcacatgcttcttcttc 394  Q
    |||||||| ||||| ||||||||||||    
T  29369136 atcactttattcacgtgcttcttcttc 29369110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 29369455 - 29369340
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatg 122  Q
    ||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| |||||| ||||||||||| |||||||| |  |||| || ||| |    
T  29369455 atcaaagcaataaaatataaaagacaggagaggcctggaccaatacaacagagatacatagagtaaaacctatgaaaagagaatccggatcaatcccaag 29369356  T
Q  123 aaaggaaaggacctaa 138  Q
    |||||||| |||||||    
T  29369355 aaaggaaaagacctaa 29369340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 283 - 394
Target Start/End: Original strand, 27786789 - 27786900
Alignment:
Q  283 caactattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcaca 382  Q
    |||||||| |||||||| ||||| ||||||| ||| |||||||||||  ||| ||||||||| ||||||||||||| |||| ||| ||||||| ||||      
T  27786789 caactattttgtatctgtcaaggtagctttggaggaaccattttgggcacggctcctcattccggctgagttaaagctagaaggcttcactttattcatc 27786888  T
Q  383 tgcttcttcttc 394  Q
    ||||| ||||||    
T  27786889 tgcttattcttc 27786900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 399521 - 399563
Alignment:
Q  33 taaaatataaaagacatgagaggcctgaaccaatacaacagag 75  Q
    |||||||||||||||| |||| |||||||||||||||||||||    
T  399521 taaaatataaaagacaggagatgcctgaaccaatacaacagag 399563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 394
Target Start/End: Original strand, 8831273 - 8831335
Alignment:
Q  332 cgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcacatgcttcttcttc 394  Q
    ||||||||||||| ||||||||||||| |||  ||| ||||||||||||  ||||||||||||    
T  8831273 cgggtcctcattccggctgagttaaagctagcaggcctcactttgttcatgtgcttcttcttc 8831335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 14295245 - 14295291
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaataca 69  Q
    ||||||| | |||||||||||||||| ||||||||||||||||||||    
T  14295245 atcaaagcactaaaatataaaagacaggagaggcctgaaccaataca 14295291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 3072281 - 3072330
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaaca 72  Q
    ||||||| | |||||||||||||||| |||| ||||||||||||||||||    
T  3072281 atcaaagcactaaaatataaaagacaggagatgcctgaaccaatacaaca 3072330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 27786554 - 27786603
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaaca 72  Q
    ||||||| | |||||||||||| ||| |||||||||||||||||||||||    
T  27786554 atcaaagcactaaaatataaaatacaggagaggcctgaaccaatacaaca 27786603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 8831017 - 8831066
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaaca 72  Q
    ||||||| | |||||||||||||||| |||| | ||||||||||||||||    
T  8831017 atcaaagcactaaaatataaaagacaggagatgtctgaaccaatacaaca 8831066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 36206257 - 36206298
Alignment:
Q  33 taaaatataaaagacatgagaggcctgaaccaatacaacaga 74  Q
    |||||||||||||||| |||||||||||| ||||||| ||||    
T  36206257 taaaatataaaagacaggagaggcctgaatcaatacatcaga 36206298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 394
Target Start/End: Complemental strand, 37050380 - 37050007
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatg 122  Q
    ||||||| ||||||||||||||| ||||||||||| |||||||||||||||||   |||||  ||||||||||| ||||||||||| ||||||| |||      
T  37050380 atcaaagcaataaaatataaaag-catgagaggcccgaaccaatacaacagagtcacatagtgtaaaacctatgaaaagagaaactggatctatcccaat 37050282  T
Q  123 aaaggaaaggacctaatgaaataggtgtcaaagacaaccattatacagaaaactagtc-aaattatgtccgttcttggccaaacaacagctaaatgactg 221  Q
    ||||| || | || || |||  |||| ||||||||||||| |  ||| |||||||||| ||| |||| || | ||||||||||||||  ||||| ||||     
T  37050281 aaagggaatgtccaaaggaacgaggtatcaaagacaaccaatgaacaaaaaactagtcaaaagtatgaccatacttggccaaacaacgactaaaagacta 37050182  T
Q  222 ccctctctatgaaaatttgaatagaagtattgacattcctagaaattct-atacaactcgatcaactattctgtatctgccaaggcagctttgaaggtac 320  Q
    | ||||||||||||||||||| | ||||||||  ||||| | | |||||  | ||| |  | |||||||| |||||||  ||| || |||||| ||||||    
T  37050181 ctctctctatgaaaatttgaacaaaagtattggtattcccatatattctgttgcaattgaaccaactattttgtatctctcaaagcggctttggaggtac 37050082  T
Q  321 cattttgggtccgggtcctcattcgggctgagttaaaggtag-acggcatcactttgttcacatgcttcttcttc 394  Q
    | |||||||  || |||||||||| ||||||||||||  ||| | ||| |||||||||||||||| |||||||||    
T  37050081 ccttttgggcacgagtcctcattccggctgagttaaaactagaaaggcttcactttgttcacatgtttcttcttc 37050007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 7492378 - 7492263
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatg 122  Q
    |||||||||||||||||||||||||| || |||||| |||||||||||||||||| |||||| ||||||||||  |||||||| |  |||| || ||| |    
T  7492378 atcaaagtaataaaatataaaagacaggataggcctcaaccaatacaacagagatacatagagtaaaacctattaaaagagaatccggatcaatcccaag 7492279  T
Q  123 aaaggaaaggacctaa 138  Q
    |||||||| |||||||    
T  7492278 aaaggaaaagacctaa 7492263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 23 - 252
Target Start/End: Original strand, 18522040 - 18522269
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatg 122  Q
    ||||||| |||||||||||||||||| |||||||||||||||||| | |||||   |||| |  ||||||||   ||| | ||||  ||||||| |||      
T  18522040 atcaaagcaataaaatataaaagacaggagaggcctgaaccaatatatcagagtcacata-aggaaaacctacaaaaacaaaaaccggatctatcccaaa 18522138  T
Q  123 aaaggaaaggacctaatgaaataggtgtcaaagacaaccattatacagaaaa-ctagtcaaattatgtccgttcttggccaaacaacagctaaatgactg 221  Q
    ||| |||||| ||||| |||| |||| ||||||||||||| |  ||| |||| |||| ||||||||| || ||||||||||||||| ||||||  ||||     
T  18522139 aaatgaaaggtcctaaggaaagaggtttcaaagacaaccaatggacataaaaactagacaaattatgaccattcttggccaaacaaaagctaatagacta 18522238  T
Q  222 ccctctctatgaaaatttgaatagaagtatt 252  Q
      ||||||||||||||||||| | |||||||    
T  18522239 tactctctatgaaaatttgaacaaaagtatt 18522269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 145 - 393
Target Start/End: Original strand, 24239705 - 24239955
Alignment:
Q  145 aggtgtcaaagacaaccattatacagaaaa-ctagtcaaattatgtccgttcttggccaaacaacagctaaatgactgccctctctatgaaaatttgaat 243  Q
    |||| |||||||| |||||||||| ||||| ||||||| |||||| |  ||||||||||||||||   || | |||| || | ||||||||||||||||     
T  24239705 aggtatcaaagaccaccattatactgaaaaactagtcatattatgacaattcttggccaaacaactattacaagactaccatttctatgaaaatttgaac 24239804  T
Q  244 agaagtattgacattcctagaaattctatacaactcgatc-aactattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcat 342  Q
    | ||||||||| |||||  |  ||||| |   | | || | ||||||| |||||||||||||  ||||||  ||||||| |||||||  |||||||||||    
T  24239805 aaaagtattgatattccctgttattcttttgtaattgagccaactattatgtatctgccaagatagcttttgaggtacccttttgggcacgggtcctcat 24239904  T
Q  343 tcgggctgagttaaaggtagacggcatcactttgttcacatgcttcttctt 393  Q
    || ||||||||||||| |||  ||| ||||||| ||||| | |||||||||    
T  24239905 tccggctgagttaaagctagtaggcttcactttattcacctacttcttctt 24239955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 7500429 - 7500314
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatg 122  Q
    ||||||| |||||||||||| ||||| || |||||||||||||||||||||| || |||||| ||||||||||  |||||||| |  |||| || ||| |    
T  7500429 atcaaagcaataaaatataacagacaggataggcctgaaccaatacaacagaaatacatagagtaaaacctattaaaagagaatccggatcaatcccaag 7500330  T
Q  123 aaaggaaaggacctaa 138  Q
    |||||||| |||||||    
T  7500329 aaaggaaaagacctaa 7500314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 223 - 390
Target Start/End: Original strand, 16832081 - 16832249
Alignment:
Q  223 cctctctatgaaaatttgaatagaagtattgacattcctagaaattct-atacaactcgatcaactattctgtatctgccaaggcagctttgaaggtacc 321  Q
    ||||||||||||||||||| || ||||||||| ||||||||  ||||| || ||| |  | | |||||| ||||||||||||| |||||||| ||| |||    
T  16832081 cctctctatgaaaatttgagtaaaagtattgatattcctagctattctgatgcaaatgaaccgactattatgtatctgccaagacagctttggaggcacc 16832180  T
Q  322 attttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcacatgcttctt 390  Q
     |||||    || ||||||||||   ||||||||||| |||  ||| ||||||||||||||||||||||    
T  16832181 cttttgaacacgtgtcctcattccaactgagttaaagttagtaggcttcactttgttcacatgcttctt 16832249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 7492259 - 7492186
Alignment:
Q  169 agaaaactagtcaaattatgtccgttcttggccaaacaacagctaaatgactgccctctctatgaaaatttgaa 242  Q
    |||||||||||||||||||  || | |||   ||||||||||||||| |||| |||| ||||||||||||||||    
T  7492259 agaaaactagtcaaattataaccatacttaagcaaacaacagctaaaagactaccctttctatgaaaatttgaa 7492186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 7500310 - 7500237
Alignment:
Q  169 agaaaactagtcaaattatgtccgttcttggccaaacaacagctaaatgactgccctctctatgaaaatttgaa 242  Q
    ||||||||||||||||| |  || | |||  |||||||| ||||||| |||| |||||||||||||||||||||    
T  7500310 agaaaactagtcaaattgtaaccatacttaaccaaacaagagctaaaagactaccctctctatgaaaatttgaa 7500237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 19852836 - 19852785
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagag 75  Q
    ||||||| | ||||||| |||||||| |||| |||||||||||||||||||||    
T  19852836 atcaaagcactaaaata-aaaagacaggagatgcctgaaccaatacaacagag 19852785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 9e-43; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 24 - 394
Target Start/End: Complemental strand, 25168221 - 25167850
Alignment:
Q  24 tcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatga 123  Q
    |||||| | |||||||||||||  | ||||||||||||||||||||||||||   |||||  ||||||||||| |||||||||||| |||||| |||  |    
T  25168221 tcaaagcagtaaaatataaaagt-aggagaggcctgaaccaatacaacagagtcacatagtgtaaaacctatgaaaagagaaactaaatctatcccaata 25168123  T
Q  124 aaggaaaggacctaatgaaataggtgtcaaagacaaccattatacagaaaactagtcaaat-tatgtccgttcttggccaaacaacagctaaatgactgc 222  Q
    |||| || |  | || |||  ||||||||||| |||||| |  ||| |||||||||||||  |||| || | ||||||||||||||  ||||| |||| |    
T  25168122 aagggaatgttcaaaggaacgaggtgtcaaaggcaaccaatgaacaaaaaactagtcaaaagtatgaccatacttggccaaacaacgactaaaagactac 25168023  T
Q  223 cctctctatgaaaatttgaatagaagtattgacattcctagaaattctata-caactcgatcaactattctgtatctgccaaggcagctttgaaggtacc 321  Q
     || |||||||||||||||| | ||||||||  ||||| | | ||||| |  ||| |  | ||||||||||||||||| |||||| |||||| |||||||    
T  25168022 tctttctatgaaaatttgaacaaaagtattggtattcccatatattctgttgcaattgaaccaactattctgtatctgtcaaggcggctttggaggtacc 25167923  T
Q  322 attttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcacatgcttcttcttc 394  Q
     |||||||   | |||||| ||| ||||||||||||  |||| ||| |||||||||||||||| |||||||||    
T  25167922 cttttgggcatgagtcctctttccggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttc 25167850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 23 - 394
Target Start/End: Complemental strand, 3949714 - 3949341
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatg 122  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||  |||||  ||||||||||| ||||||||||  ||||||| | | |    
T  3949714 atcaaagcaataaaatataaaag-catgagaggtctgaaccaatacaacagagacacatagtgtaaaacctatgaaaagagaaaccggatctatcctaag 3949616  T
Q  123 aaaggaaaggacctaatgaaataggtgtcaaagacaaccattatacagaaaa-ctagtc-aaattatgtccgttcttggccaaacaacagctaaatgact 220  Q
    ||||| || ||||||| |||  |||||||||||||||| | || |||||||| |||||| ||| |||| || |||||||||||| |||  || || ||||    
T  3949615 aaagggaatgacctaaggaacgaggtgtcaaagacaactaataaacagaaaagctagtcaaaagtatgaccattcttggccaaataacgactgaaagact 3949516  T
Q  221 gccctctctatgaaaatttgaatagaagtattgacattcctagaaattct-atacaactcgatcaactattctgtatctgccaaggcagctttgaaggta 319  Q
     | | ||||| ||||||||||| | ||||||||  ||||  ||| |||||  | ||| |  ||||||||||||| ||||| |||||| |||||| |||||    
T  3949515 actccctctaagaaaatttgaacaaaagtattggtattctcagatattctgttgcaattgaatcaactattctgcatctgtcaaggcggctttggaggta 3949416  T
Q  320 ccattttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcacatgcttcttcttc 394  Q
    || || ||    || |||||||||| |||| |||||||  || |  || ||||||| ||||| || |||||||||    
T  3949415 cccttctgaacacgagtcctcattctggctcagttaaaactaaaaagcttcactttattcacctgtttcttcttc 3949341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 393
Target Start/End: Original strand, 4263371 - 4263481
Alignment:
Q  283 caactattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcaca 382  Q
    ||||||||| |||||||||||| ||  |||| ||| ||| ||||| |  ||||||||||||| ||||||||||||  |||  ||| ||| |||||| |||    
T  4263371 caactattccgtatctgccaagacaattttggaggaacccttttgagcacgggtcctcattccggctgagttaaaactagcaggcttcattttgtttaca 4263470  T
Q  383 tgcttcttctt 393  Q
    |||||||||||    
T  4263471 tgcttcttctt 4263481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 5605509 - 5605576
Alignment:
Q  122 gaaaggaaaggacctaatgaaataggtgtcaaagacaaccattatacagaa-aactagtcaaattatg 188  Q
    ||||||||||| ||||| |||| ||||||||||||| || ||| ||||||| ||||| ||||||||||    
T  5605509 gaaaggaaaggccctaaagaaagaggtgtcaaagaccactattgtacagaagaactactcaaattatg 5605576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 10990368 - 10990316
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagag 75  Q
    ||||||||| |||||||| ||||||  |||||| ||||||||||||| |||||    
T  10990368 atcaaagtactaaaatattaaagacgggagaggtctgaaccaatacagcagag 10990316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 169 - 394
Target Start/End: Complemental strand, 31092549 - 31092323
Alignment:
Q  169 agaaaactagtcaaattatgtccgttcttggccaaacaacagctaaatgactgccctctctatgaaaatttgaatagaagtattgacattcctagaaatt 268  Q
    |||||||||||||||||||  || |  ||  |||||||||||||||| |||| ||||||||||||||||||||| | ||| |||||| ||||  || |||    
T  31092549 agaaaactagtcaaattataaccatatttaaccaaacaacagctaaaagactaccctctctatgaaaatttgaacaaaagcattgacgttcccggatatt 31092450  T
Q  269 cta-tacaactcgatcaactattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaaggtagacggc 367  Q
    ||| | ||| | || ||||||||||||||||| |||| |  ||||| ||||||| |||||||  || |||||||||| ||||||||||||  |||| |||    
T  31092449 ctaatgcaaatggaccaactattctgtatctggcaagacgactttggaggtacccttttgggcacgagtcctcattccggctgagttaaatctagaaggc 31092350  T
Q  368 atcactttgttcacatgcttcttcttc 394  Q
    |||||||| ||||| || |||||||||    
T  31092349 atcactttattcacgtgattcttcttc 31092323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 31092668 - 31092561
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatg 122  Q
    ||||||| |||||||||||||||||  ||||| ||||||||||||||||| | || |||||| ||||||||||| |||||||| ||||||| || ||| |    
T  31092668 atcaaagcaataaaatataaaagacgggagagacctgaaccaatacaacaaatatacatagagtaaaacctatgaaaagagaatctagatcaatcccaag 31092569  T
Q  123 aaaggaaa 130  Q
    ||||||||    
T  31092568 aaaggaaa 31092561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 283 - 394
Target Start/End: Original strand, 14296260 - 14296371
Alignment:
Q  283 caactattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcaca 382  Q
    |||||||| |||||||||||||||| ||||| ||||||| ||||||   || || ||||||| ||||||||||||| |||  ||| ||| ||||||||      
T  14296260 caactattatgtatctgccaaggcatctttggaggtacccttttggacacgagtgctcattccggctgagttaaagctagtaggcttcattttgttcatc 14296359  T
Q  383 tgcttcttcttc 394  Q
    ||||||||||||    
T  14296360 tgcttcttcttc 14296371  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 283 - 394
Target Start/End: Original strand, 18811707 - 18811818
Alignment:
Q  283 caactattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcaca 382  Q
    ||||||||||||||||| ||||| ||||||| |||  || |||||||  ||||||||||||| ||||||||||||| || |  || ||||||| | |||     
T  18811707 caactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaagcttcactttatgcacc 18811806  T
Q  383 tgcttcttcttc 394  Q
    ||||||||||||    
T  18811807 tgcttcttcttc 18811818  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 18811481 - 18811533
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagag 75  Q
    ||||||| | |||||||||||||||| ||||||||||||||||||||||||||    
T  18811481 atcaaagcactaaaatataaaagacaggagaggcctgaaccaatacaacagag 18811533  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 392
Target Start/End: Original strand, 8413819 - 8413928
Alignment:
Q  283 caactattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcaca 382  Q
    ||||||||| |||| || || | |||||||| ||||||| ||||| |  ||||||||||||| || |||||| ||| |||  ||| ||||||||||| |     
T  8413819 caactattcagtatatggcaggacagctttggaggtacccttttgagcacgggtcctcattccggttgagttgaagctagtaggcttcactttgttcgcc 8413918  T
Q  383 tgcttcttct 392  Q
    ||||||||||    
T  8413919 tgcttcttct 8413928  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 394
Target Start/End: Complemental strand, 37344739 - 37344626
Alignment:
Q  281 atcaactattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttca 380  Q
    |||||||||| ||||| || |||||| |||||| || |||| |||||||  ||  ||||||||| ||||||||||||  ||||  |  ||||||||||||    
T  37344739 atcaactattatgtatatgtcaaggcggctttggagatacccttttgggcacgaatcctcattccggctgagttaaaactagaatgattcactttgttca 37344640  T
Q  381 catgcttcttcttc 394  Q
    | || |||||||||    
T  37344639 cctgtttcttcttc 37344626  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 30180171 - 30180038
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagagatgcatagactaaaacctatgtaaagagaaactagatctattccatg 122  Q
    ||||||| ||||||||||||| |||  |||||||||||| ||||||| |||||   || ||  ||||| ||||| ||||| ||| |  |||| | | |      
T  30180171 atcaaagcaataaaatataaacgacgagagaggcctgaatcaatacaccagagtcacaaagtgtaaaatctatgaaaagaaaaattgaatctgtactaaa 30180072  T
Q  123 aaaggaaaggacctaatgaaataggtgtcaaaga 156  Q
    |||||||||| ||||| |||| ||||||||||||    
T  30180071 aaaggaaaggtcctaaggaaagaggtgtcaaaga 30180038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 13502936 - 13502884
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagag 75  Q
    ||||||| | |||||||||||||||| |||| || |||| |||||||||||||    
T  13502936 atcaaagcactaaaatataaaagacaggagatgcatgaatcaatacaacagag 13502884  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 33898400 - 33898436
Alignment:
Q  39 ataaaagacatgagaggcctgaaccaatacaacagag 75  Q
    |||||||| |||||||| |||||||||||||||||||    
T  33898400 ataaaagatatgagaggtctgaaccaatacaacagag 33898436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 394
Target Start/End: Complemental strand, 10377 - 10266
Alignment:
Q  283 caactattctgtatctgccaaggcagctttgaaggtaccattttgggtccgggtcctcattcgggctgagttaaaggtagacggcatcactttgttcaca 382  Q
    |||||||| |||| |||||||| |||||||| || |||  |||| ||  ||||||||||||| ||||||||||||  |||  ||| ||||||||| |||     
T  10377 caactattatgtagctgccaagacagctttggagttactcttttaggcacgggtcctcattccggctgagttaaaactagcaggcctcactttgtgcacg 10278  T
Q  383 tgcttcttcttc 394  Q
    ||||||||||||    
T  10277 tgcttcttcttc 10266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 10611 - 10560
Alignment:
Q  23 atcaaagtaataaaatataaaagacatgagaggcctgaaccaatacaacagag 75  Q
    ||||||| | ||||||| |||||||| |||| |||||||||||||||||||||    
T  10611 atcaaagcactaaaata-aaaagacaggagatgcctgaaccaatacaacagag 10560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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