View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_low_25 (Length: 393)
Name: NF6533_low_25
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 377
Target Start/End: Original strand, 2325731 - 2326103
Alignment:
| Q |
8 |
cagaacctgtggtatgtacatattgctatttattccattaaatcatagatattacaaactgattagacttaaatgattaatgaatttcatataagggcaa |
107 |
Q |
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| T |
2325731 |
cagaatctgtggtatgtacatattgctatttattccattaaatcatagatattacaaactgattagacttaaatgataaatgagtttcatataagagcaa |
2325830 |
T |
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| Q |
108 |
actctttggaagaagtcgaactcaattactaaatacaacagttatttatcatcttttnnnnnnnnnnnnn---caattatttatcatgctttatttatca |
204 |
Q |
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| T |
2325831 |
actctttggaagaagtcgaactcaattcctaaatacaacaattatttatcatccttcaaaaaaaaaaaaaaaacaattatttatcatactttatttatct |
2325930 |
T |
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| Q |
205 |
tccgttcaaaccctaaattaaacatcaaaaagttgagcccttggaaatgtcnnnnnnngttatctctattttttcatcaataaatgtctttttattgctt |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2325931 |
tccgttcaaaccctaaattaaacatcaaaaagttgagcccttggaaatgtctttttttgttatctctattttttcatcaataaatgtctttttattgctt |
2326030 |
T |
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| Q |
305 |
caaaatataaattctcaaacacatgcaggagcttgatcagaatatctcagcacaaattgatgcactaaaaaag |
377 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326031 |
caaaatataaattctcaaacacttgcaggagcttgatcagaatatctcagcacaaattgatgcactaaaaaag |
2326103 |
T |
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