View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_low_26 (Length: 393)
Name: NF6533_low_26
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 383
Target Start/End: Original strand, 6003367 - 6003740
Alignment:
| Q |
11 |
cacagacacgtggatattacggtggtccatgcatgaaggaattttgtaagcatggttaaggtcgacatcttaatcatggatccattatttggt-ggatag |
109 |
Q |
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| T |
6003367 |
cacagacacgtggatattatggtggtccatgcatgaaggaattttgtaagcatggttaaggtcgacatcttaatcatggatccattatttggttggatag |
6003466 |
T |
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| Q |
110 |
gctcaccactttcaccactcaaattcattttctacatttctatttctcattttgaagataagagattaagaagtgtactccataaccaaataaatgaact |
209 |
Q |
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| T |
6003467 |
gctcaccactttcaccactcaaattcattttctacatttctatttctcattttgaagataagagattaagaagtgtactccataaccaaataaatgaatt |
6003566 |
T |
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| Q |
210 |
acaacgtaagaaaatataacattagagatctatttggaaaccgcacattgacggctcttcaagagtgggtggggtctaaaggaaatttgaaataaacatt |
309 |
Q |
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| T |
6003567 |
acaacgtaagaaaatataacattagagatctatttggaaaccgcacattgacggctcttcaagagtgggtggggtctaaaggaaatttgaaataaacatt |
6003666 |
T |
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| Q |
310 |
tttgtttgaagagagagactttaaagnnnnnnnnnnnactagcatgggaggtctttttatataaataaaacaat |
383 |
Q |
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| T |
6003667 |
tttgtttgaagagagagactttaaagtatttttttttactagcatgggaggtctttttatataaataaaacaat |
6003740 |
T |
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