View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6533_low_31 (Length: 366)

Name: NF6533_low_31
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6533_low_31
NF6533_low_31
[»] chr4 (10 HSPs)
chr4 (224-352)||(54231014-54231142)
chr4 (16-142)||(54231222-54231348)
chr4 (281-352)||(51789953-51790025)
chr4 (281-352)||(9033801-9033873)
chr4 (281-352)||(44506410-44506482)
chr4 (281-352)||(39502884-39502956)
chr4 (281-352)||(127797-127869)
chr4 (281-352)||(37995743-37995815)
chr4 (281-339)||(29051798-29051856)
chr4 (281-352)||(24072670-24072742)
[»] chr5 (10 HSPs)
chr5 (281-352)||(13946219-13946290)
chr5 (281-339)||(28612003-28612061)
chr5 (281-352)||(22213561-22213633)
chr5 (281-339)||(42393870-42393928)
chr5 (281-352)||(25897761-25897833)
chr5 (281-352)||(26674335-26674407)
chr5 (281-352)||(26945941-26946013)
chr5 (281-352)||(30493735-30493807)
chr5 (281-352)||(30534078-30534150)
chr5 (280-352)||(36275794-36275867)
[»] chr7 (9 HSPs)
chr7 (281-352)||(41743400-41743472)
chr7 (281-352)||(22916520-22916592)
chr7 (281-352)||(27619933-27620005)
chr7 (281-352)||(44080131-44080203)
chr7 (281-352)||(30586340-30586412)
chr7 (281-351)||(31293304-31293374)
chr7 (281-352)||(20372281-20372353)
chr7 (281-352)||(47266543-47266615)
chr7 (281-352)||(49141800-49141872)
[»] chr3 (10 HSPs)
chr3 (281-352)||(3777551-3777623)
chr3 (281-352)||(30800860-30800932)
chr3 (281-352)||(41958271-41958343)
chr3 (281-341)||(8082186-8082246)
chr3 (281-352)||(24373348-24373420)
chr3 (281-352)||(28246709-28246781)
chr3 (281-352)||(45572935-45573007)
chr3 (281-352)||(53151377-53151449)
chr3 (281-339)||(18996880-18996938)
chr3 (281-339)||(18999419-18999477)
[»] chr1 (10 HSPs)
chr1 (281-352)||(45360466-45360538)
chr1 (281-339)||(5555502-5555560)
chr1 (281-352)||(6693876-6693948)
chr1 (281-352)||(14236672-14236744)
chr1 (281-352)||(21620335-21620407)
chr1 (281-352)||(43068869-43068941)
chr1 (280-339)||(4643879-4643938)
chr1 (281-352)||(3656796-3656868)
chr1 (281-352)||(25473668-25473740)
chr1 (281-352)||(40125707-40125779)
[»] chr8 (8 HSPs)
chr8 (281-352)||(2735130-2735202)
chr8 (281-352)||(18915985-18916057)
chr8 (281-352)||(35563588-35563660)
chr8 (281-352)||(38526776-38526848)
chr8 (283-352)||(24697824-24697894)
chr8 (281-352)||(1197393-1197465)
chr8 (281-352)||(11661144-11661216)
chr8 (281-352)||(38567001-38567073)
[»] chr2 (5 HSPs)
chr2 (281-352)||(15805596-15805668)
chr2 (281-352)||(32597649-32597721)
chr2 (281-352)||(34580257-34580329)
chr2 (281-352)||(5614379-5614451)
chr2 (281-339)||(30522757-30522815)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 6e-62; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 224 - 352
Target Start/End: Complemental strand, 54231142 - 54231014
Alignment:
Q  224 cctttccaatcaaattaacacatctcaacaatcaacatatttgatttctaatgggtatgtttgtttgaaggttaataatgacattttcaagaatacatgg 323  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  54231142 cctttccaatcaaattaacacatctcaacgatcaacatatttgatttctaatgggtgtgtttgtttgaaggttaataatgacattttcaagaatacatgg 54231043  T
Q  324 ttagggaatgattatatcatgtttgttat 352  Q
    |||||||||||||||||||||||||||||    
T  54231042 ttagggaatgattatatcatgtttgttat 54231014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 54231348 - 54231222
Alignment:
Q  16 atactcatgatatctttcttgacaacttgatcaaagttacggtaaatcgacatcaatatggttgatagtgatctaatacaaaggaagcataacaaataaa 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54231348 atactcatgatatctctcttgacaacttgatcaaagttacggtaaatagacatcaatatggttgatagtgatctaatacaaaggaagcataacaaataaa 54231249  T
Q  116 aaataagtaacaaatacaagatatttg 142  Q
    |||||||||||||||||||||||||||    
T  54231248 aaataagtaacaaatacaagatatttg 54231222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 51789953 - 51790025
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    |||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  51789953 tgtttgtttgaaggttaagaataacattctcaagaatacatggttagggaatgattatactcatgtttgttat 51790025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 9033801 - 9033873
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  || |||||||||||||||||||||||||| |||||||||||||    
T  9033801 tgtttgtttcaaggttaagaatgacattcccaggaatacatggttagggaatgattatactcatgtttgttat 9033873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 44506482 - 44506410
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| ||||||||||||  |||||||||| |||||||||||||||  ||||||||||||    
T  44506482 tgtttgtttcaaggttaagaatgacattttcgggaatacatggctagggaatgattatacccatgtttgttat 44506410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 39502956 - 39502884
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattatat-catgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  |  ||||||||| ||||||||||||||||| ||||||||||||    
T  39502956 tgtttgtttcaaggttaagaatgacattcccgggaatacatgattagggaatgattatatccatgtttgttat 39502884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 127797 - 127869
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  |  |||||||| | ||||||||||||||| |||||||||||||    
T  127797 tgtttgtttcaaggttaagaatgacattcccgggaatacatagctagggaatgattatactcatgtttgttat 127869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 37995815 - 37995743
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| ||||| |||  || ||||||||||||| ||||||||||||  ||||||||||||    
T  37995815 tgtttgtttcaaggttaagaatgatattcccatgaatacatggttacggaatgattatacccatgtttgttat 37995743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 339
Target Start/End: Original strand, 29051798 - 29051856
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata 339  Q
    ||||||||| |||||||| |||||||||  |  |||||||||| |||||||||||||||    
T  29051798 tgtttgtttcaaggttaagaatgacattcccgggaatacatggctagggaatgattata 29051856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 24072742 - 24072670
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| ||||| |||  |  |||||||||| |||||||||||||||  ||||||||||||    
T  24072742 tgtttgtttcaaggttaagaatgatattcccgggaatacatggctagggaatgattatacccatgtttgttat 24072670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 13946219 - 13946290
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattatatcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  | ||||||||||| ||||||||||||||||||||||||||||    
T  13946219 tgtttgtttcaaggttaagaatgacattcccgagaatacatggctagggaatgattatatcatgtttgttat 13946290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 28612061 - 28612003
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata 339  Q
    ||||||||| |||||||| |||||||||||| ||||||||||| |||||||||||||||    
T  28612061 tgtttgtttcaaggttaaaaatgacattttcgagaatacatggctagggaatgattata 28612003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 22213633 - 22213561
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattatat-catgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  |  ||||||||||||||||||||||||||| ||||||||||||    
T  22213633 tgtttgtttcaaggttaagaatgacattcccgggaatacatggttagggaatgattatatccatgtttgttat 22213561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 339
Target Start/End: Original strand, 42393870 - 42393928
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata 339  Q
    ||||||||| |||||||| |||||||||  | ||||||||||| |||||||||||||||    
T  42393870 tgtttgtttcaaggttaagaatgacattcccgagaatacatggctagggaatgattata 42393928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 25897761 - 25897833
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  |  |||||||||| |||||||||||||||  ||||||||||||    
T  25897761 tgtttgtttcaaggttaagaatgacattcccgggaatacatggctagggaatgattatacccatgtttgttat 25897833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 26674407 - 26674335
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  |  |||||||||| |||||||||||||||  ||||||||||||    
T  26674407 tgtttgtttcaaggttaagaatgacattcccgggaatacatggctagggaatgattatacccatgtttgttat 26674335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 26946013 - 26945941
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  |  |||||||||| |||||||||||||||  ||||||||||||    
T  26946013 tgtttgtttcaaggttaagaatgacattcccgggaatacatggctagggaatgattatacccatgtttgttat 26945941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 30493735 - 30493807
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  |  |||||||||| |||||||||||||||  ||||||||||||    
T  30493735 tgtttgtttcaaggttaagaatgacattcccgggaatacatggctagggaatgattatacccatgtttgttat 30493807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 30534078 - 30534150
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  |  |||||||||| |||||||||||||||  ||||||||||||    
T  30534078 tgtttgtttcaaggttaagaatgacattcccgggaatacatggctagggaatgattatacccatgtttgttat 30534150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 352
Target Start/End: Complemental strand, 36275867 - 36275794
Alignment:
Q  280 atgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    |||||||||| |||||||| |||||||||| |   ||||||| | |||||||||||||||  ||||||||||||    
T  36275867 atgtttgtttcaaggttaagaatgacatttcctgaaatacatagctagggaatgattatacacatgtttgttat 36275794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 41743472 - 41743400
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||| | ||||||||||| |||||||||||||||  ||||||||||||    
T  41743472 tgtttgtttcaaggttaagaatgacatttccgagaatacatggctagggaatgattatacacatgtttgttat 41743400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 22916520 - 22916592
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| ||||||||||    |||||||||||||| ||||||||||| |||||||||||||    
T  22916520 tgtttgtttcaaggttaagaatgacatttctgggaatacatggttagagaatgattatactcatgtttgttat 22916592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 27619933 - 27620005
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattatat-catgtttgttat 352  Q
    ||||||||| |||||||| ||||||||||  | |||||||||||||| |||||||| ||| ||||||||||||    
T  27619933 tgtttgtttcaaggttaaaaatgacatttctaggaatacatggttagagaatgattgtatccatgtttgttat 27620005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 44080203 - 44080131
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattatat-catgtttgttat 352  Q
    ||||| ||| |||||||| |||||||||  |  ||||||||||||||||||||||||||| ||||||||||||    
T  44080203 tgtttcttttaaggttaagaatgacattcccgggaatacatggttagggaatgattatatccatgtttgttat 44080131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 30586412 - 30586340
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||| |  |||||||||  |||||||||||||||  ||||||||||||    
T  30586412 tgtttgtttcaaggttaagaatgacatttccgggaatacatgactagggaatgattatacccatgtttgttat 30586340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 351
Target Start/End: Complemental strand, 31293374 - 31293304
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgtta 351  Q
    ||||||||| |||||||| ||||||||||||   ||||||||| |||||||||| |||| ||||||||||||    
T  31293374 tgtttgttttaaggttaagaatgacattttcggaaatacatggctagggaatga-tatactcatgtttgtta 31293304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 20372281 - 20372353
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||| ||  |  |||||||||| |||||||||||||||  ||||||||||||    
T  20372281 tgtttgtttcaaggttaagaatgactttcccgggaatacatggctagggaatgattatacccatgtttgttat 20372353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 47266615 - 47266543
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    |||||||||  ||||||| |||||||||  |  |||||||||| |||||||||||||||  ||||||||||||    
T  47266615 tgtttgtttcgaggttaagaatgacattcccgggaatacatggctagggaatgattatacccatgtttgttat 47266543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 49141800 - 49141872
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  |  |||||||||| || ||||||||||||  ||||||||||||    
T  49141800 tgtttgtttcaaggttaagaatgacattcccgggaatacatggctaaggaatgattatacccatgtttgttat 49141872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 3777623 - 3777551
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||| | ||||||||||| |||||||||||||||  ||||||||||||    
T  3777623 tgtttgtttcaaggttaagaatgacatttccgagaatacatggctagggaatgattatacccatgtttgttat 3777551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 30800860 - 30800932
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| ||||||||||||  |||||||||| |||||||||||||||  ||||||||||||    
T  30800860 tgtttgtttcaaggttaagaatgacattttcgggaatacatggctagggaatgattatacccatgtttgttat 30800932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 41958343 - 41958271
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattatat-catgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  |  |||||||||| |||||||||||||||| ||||||||||||    
T  41958343 tgtttgtttcaaggttaagaatgacattcccgggaatacatggctagggaatgattatatccatgtttgttat 41958271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 8082186 - 8082246
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattatatc 341  Q
    ||||||||| |||||||| |||||||||  |  |||||||||| |||||||||||||||||    
T  8082186 tgtttgtttcaaggttaagaatgacattcccgggaatacatggctagggaatgattatatc 8082246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 24373420 - 24373348
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  |  |||||||||| |||||||||||||||  ||||||||||||    
T  24373420 tgtttgtttcaaggttaagaatgacattcccgggaatacatggctagggaatgattatacccatgtttgttat 24373348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 28246709 - 28246781
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||| |  |||||||||  |||||||||||||||  ||||||||||||    
T  28246709 tgtttgtttcaaggttaagaatgacatttccgggaatacatgactagggaatgattatacccatgtttgttat 28246781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 45573007 - 45572935
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  |  |||||||||| |||||||||||||||  ||||||||||||    
T  45573007 tgtttgtttcaaggttaagaatgacattcccgggaatacatggctagggaatgattatacccatgtttgttat 45572935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 53151377 - 53151449
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  |  |||||||||| |||||||||||||||  ||||||||||||    
T  53151377 tgtttgtttcaaggttaagaatgacattcccgggaatacatggctagggaatgattatacccatgtttgttat 53151449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 18996938 - 18996880
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata 339  Q
    ||||||||| |||||||| |||||||||  |  |||||||||| |||||||||||||||    
T  18996938 tgtttgtttcaaggttaagaatgacattcccgggaatacatggctagggaatgattata 18996880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 18999477 - 18999419
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata 339  Q
    ||||||||| |||||||| |||||||||  |  |||||||||| |||||||||||||||    
T  18999477 tgtttgtttcaaggttaagaatgacattcccgggaatacatggctagggaatgattata 18999419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 45360538 - 45360466
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattatat-catgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  |  ||||||||||||||||||||||||||| ||||||||||||    
T  45360538 tgtttgtttcaaggttaagaatgacattcccgggaatacatggttagggaatgattatatccatgtttgttat 45360466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 5555560 - 5555502
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata 339  Q
    ||||||||| |||||||| |||||||||  || ||||||||||||||||||||||||||    
T  5555560 tgtttgtttcaaggttaagaatgacattcccaggaatacatggttagggaatgattata 5555502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 6693876 - 6693948
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  || |||||||||  ||||||||||||||| |||||||||||||    
T  6693876 tgtttgtttcaaggttaagaatgacattcccacgaatacatgactagggaatgattatactcatgtttgttat 6693948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 14236744 - 14236672
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  |  |||||||||| |||||||||||||||  ||||||||||||    
T  14236744 tgtttgtttcaaggttaagaatgacattcccgggaatacatggctagggaatgattatacccatgtttgttat 14236672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 21620407 - 21620335
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  |  ||||||||||||||| ||||||||||  ||||||||||||    
T  21620407 tgtttgtttcaaggttaagaatgacattcccgggaatacatggttaggaaatgattatacccatgtttgttat 21620335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 43068869 - 43068941
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| ||||||||| ||   ||||||||| |||||||||||||||  ||||||||||||    
T  43068869 tgtttgtttcaaggttaagaatgacattatcggaaatacatggctagggaatgattatacccatgtttgttat 43068941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 339
Target Start/End: Complemental strand, 4643938 - 4643879
Alignment:
Q  280 atgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata 339  Q
    |||||||||| |||||||| ||||||||||||  |||||||||| ||  |||||||||||    
T  4643938 atgtttgtttcaaggttaagaatgacattttcgggaatacatggctaaagaatgattata 4643879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 3656868 - 3656796
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattatatc-atgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  |  |||||||| | ||||||||||||||| | |||||||||||    
T  3656868 tgtttgtttcaaggttaagaatgacattcccgggaatacatagctagggaatgattataccaatgtttgttat 3656796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 25473668 - 25473740
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  |  |||||||| | |||||||||||||||  ||||||||||||    
T  25473668 tgtttgtttcaaggttaagaatgacattcccgggaatacatagctagggaatgattatacccatgtttgttat 25473740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 40125779 - 40125707
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||| ||| |||||||| ||||||||||    |||||||||| |||||||||||||||  ||||||||||||    
T  40125779 tgtttatttcaaggttaagaatgacatttctgggaatacatggctagggaatgattatacccatgtttgttat 40125707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 2735202 - 2735130
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  || |||||||||| |||||||||||||||  ||||||||||||    
T  2735202 tgtttgtttcaaggttaagaatgacattcccaggaatacatggctagggaatgattatacccatgtttgttat 2735130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 18915985 - 18916057
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||| |  |||||||||| |||||||||||||||  ||||||||||||    
T  18915985 tgtttgtttcaaggttaagaatgacatttccgggaatacatggctagggaatgattatacccatgtttgttat 18916057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 35563588 - 35563660
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| ||||| |||| |  ||||||||| ||||||||||||||||  ||||||||||||    
T  35563588 tgtttgtttcaaggttaagaatgatatttccgggaatacatgattagggaatgattatacccatgtttgttat 35563660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 38526848 - 38526776
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| ||||||||||    |||||||||| |||||||||||||||  ||||||||||||    
T  38526848 tgtttgtttcaaggttaagaatgacatttctcggaatacatggctagggaatgattatacccatgtttgttat 38526776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 352
Target Start/End: Complemental strand, 24697894 - 24697824
Alignment:
Q  283 tttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||| |||||||| ||||||||||    |||||||||| |||||||||||||||  ||||||||||||    
T  24697894 tttgtttcaaggttaagaatgacatttctgggaatacatggctagggaatgattatacccatgtttgttat 24697824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 1197393 - 1197465
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattatat-catgtttgttat 352  Q
    ||||||||| ||||| || |||||||||     |||||||||| |||||||||||||||| ||||||||||||    
T  1197393 tgtttgtttcaaggtgaagaatgacattcctgggaatacatggctagggaatgattatatccatgtttgttat 1197465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 11661144 - 11661216
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  |   ||||||||| |||||||||||||||  ||||||||||||    
T  11661144 tgtttgtttcaaggttaagaatgacattcccggaaatacatggctagggaatgattatacccatgtttgttat 11661216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 38567001 - 38567073
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattatat-catgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  |   ||||||||| ||||| |||||||||| ||||||||||||    
T  38567001 tgtttgtttcaaggttaagaatgacattcccggaaatacatggctaggggatgattatatccatgtttgttat 38567073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 15805596 - 15805668
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||| |  |||||||||| |||||||||||||||  ||||||||||||    
T  15805596 tgtttgtttcaaggttaagaatgacatttccgggaatacatggctagggaatgattatacccatgtttgttat 15805668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 32597721 - 32597649
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||| |  |||||||||| |||||||||||||||  ||||||||||||    
T  32597721 tgtttgtttcaaggttaagaatgacatttccgggaatacatggctagggaatgattatacccatgtttgttat 32597649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 34580329 - 34580257
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  |  ||||||||||||||||||||||||||  ||||||||||||    
T  34580329 tgtttgtttcaaggttaagaatgacattcccgggaatacatggttagggaatgattatacccatgtttgttat 34580257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 5614379 - 5614451
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata-tcatgtttgttat 352  Q
    ||||||||| |||||||| |||||||||  |  |||||||||| |||||||||||||||  ||||||||||||    
T  5614379 tgtttgtttcaaggttaagaatgacattcccgggaatacatggctagggaatgattatacccatgtttgttat 5614451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 30522815 - 30522757
Alignment:
Q  281 tgtttgtttgaaggttaataatgacattttcaagaatacatggttagggaatgattata 339  Q
    ||||||||| |||||||| |||||||||  |  |||||||||| |||||||||||||||    
T  30522815 tgtttgtttcaaggttaagaatgacattcccgggaatacatggctagggaatgattata 30522757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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