View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_low_34 (Length: 357)
Name: NF6533_low_34
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 42 - 348
Target Start/End: Complemental strand, 50580636 - 50580331
Alignment:
| Q |
42 |
atcgtgcatgaataattttagggaaggcaaagatgggagaaaaggaatggtacttttttaatatgagagatcgtaaatatccaaccggtgtgagaacgaa |
141 |
Q |
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| T |
50580636 |
atcgtgcatgaata-ttttagggaaggcaaagatgggagaaaaggaatggtactttttcaatatgagagatcgtaaatatccaaccggtgtgagaacgaa |
50580538 |
T |
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| Q |
142 |
tcgagcaacaaacaccggatactggaagaccacagggaaagacagagaaatcttcgacagtgttacatcggagttggttggaatgaagaagacattggtc |
241 |
Q |
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| T |
50580537 |
tcgagcaacaaacaccggatactggaagaccacagggaaagacagagaaatcttcgacagtgttacatcggagttggttggaatgaagaagacattggtc |
50580438 |
T |
|
| Q |
242 |
ttttacaaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaataccgtattcactctaaatccagctttagaacaaacaaggtatgta |
341 |
Q |
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| T |
50580437 |
ttttacaaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaataccgtattcactctaaatccacctttagaacaaacaaggtatgta |
50580338 |
T |
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| Q |
342 |
gtataat |
348 |
Q |
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||||||| |
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| T |
50580337 |
gtataat |
50580331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 11462987 - 11462908
Alignment:
| Q |
218 |
gttggaatgaagaagacattggtcttttacaaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaata |
297 |
Q |
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| T |
11462987 |
gttggaatgaagaaaactcttgttttctacaaaggaagagcacctaaaggagagaaaagtaattgggtaatgcatgaata |
11462908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 60 - 338
Target Start/End: Original strand, 1059175 - 1059453
Alignment:
| Q |
60 |
tagggaaggcaaagatgggagaaaaggaatggtacttttttaatatgagagatcgtaaatatccaaccggtgtgagaacgaatcgagcaacaaacaccgg |
159 |
Q |
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|||||||||| |||||||| ||| ||||||||||| || | | | |||||||||||||||||||| ||||||||||| ||| ||||||||||||| || |
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| T |
1059175 |
tagggaaggccaagatgggtacaaaagaatggtacttcttcagtctaagagatcgtaaatatccaacaggtgtgagaactaatagagcaacaaacactgg |
1059274 |
T |
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| Q |
160 |
atactggaagaccacagggaaagacagagaaatcttcgacagtgttacatcggagttggttggaatgaagaagacattggtcttttacaaaggcagagct |
259 |
Q |
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| T |
1059275 |
atattggaaaaccacagggaaagacaaggagattttcaacagtgttacatcagaattagttggtatgaagaagactttggttttttacaaaggtcgggct |
1059374 |
T |
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| Q |
260 |
cctcgaggagagaaaagtaattgggtcatgcatgaataccgtattcactctaaatccagctttagaacaaacaaggtat |
338 |
Q |
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| T |
1059375 |
cctagaggagagaaaaccaactgggttatgcatgaataccgtatccattccaaatccagtattagaaccaacaaggtat |
1059453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 297
Target Start/End: Original strand, 45058993 - 45059076
Alignment:
| Q |
214 |
gttggttggaatgaagaagacattggtcttttacaaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaata |
297 |
Q |
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| T |
45058993 |
gttggttggtatgaagaaaactcttgttttctacaaaggaagagcacctaaaggagaaaaaagtaattgggtcatgcatgaata |
45059076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 32991047 - 32991129
Alignment:
| Q |
68 |
gcaaagatgggagaaaaggaatggtacttttttaatatgagagatcgtaaatatccaaccggtgtgagaacgaatcgagcaac |
150 |
Q |
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| T |
32991047 |
gcaaagatgggagagaaagaatggtactttttttgtcagaaagatagaaaatatccaacaggtatgagaacaaatagagcaac |
32991129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 3893374 - 3893451
Alignment:
| Q |
219 |
ttggaatgaagaagacattggtcttttacaaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaat |
296 |
Q |
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| T |
3893374 |
ttggaatgaagaaaacacttgttttctacaaaggaagagctcctaaaggtgaaaaaacaaattgggtcatgcatgaat |
3893451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 10317671 - 10317623
Alignment:
| Q |
248 |
aaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaat |
296 |
Q |
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| T |
10317671 |
aaaggtagagctccaagaggagagaaaaccaattgggtcatgcatgaat |
10317623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 297
Target Start/End: Complemental strand, 31606050 - 31606022
Alignment:
| Q |
269 |
gagaaaagtaattgggtcatgcatgaata |
297 |
Q |
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| T |
31606050 |
gagaaaagtaattgggtcatgcatgaata |
31606022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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